Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00855
(764 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 33 0.16
At3g05210.1 68416.m00568 nucleotide repair protein, putative sim... 30 1.5
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 29 2.6
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 4.5
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 29 4.5
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta... 28 5.9
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta... 28 5.9
At1g35820.1 68414.m04451 hypothetical protein 28 5.9
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 28 7.8
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family... 28 7.8
At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibit... 28 7.8
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 33.5 bits (73), Expect = 0.16
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = -1
Query: 629 TF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTAS 450
+F F SAS TPA+T P+F + + + P + +ST + S +A PG + F S
Sbjct: 90 SFGFGSSASVTPASTTPSFG-FGTAASSSAPAPSLFGSSTTNAS--SAAPGSSPFGFVTS 146
Query: 449 SRRNSSSQPTTGSSTLG 399
S +SS T SS G
Sbjct: 147 S---ASSTATPSSSLFG 160
>At3g05210.1 68416.m00568 nucleotide repair protein, putative
similar to nucleotide repair protein [Lilium
longiflorum] GI:3297891, SP|P07992 DNA excision repair
protein ERCC-1 {Homo sapiens}; contains Pfam profile
PF00633: Helix-hairpin-helix motif
Length = 410
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -1
Query: 578 AFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLG 399
AF+ +KS+ + P +S AAS+ S + +P +++ +SS+ TGS
Sbjct: 59 AFAFVKSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSN 118
Query: 398 VTHLR 384
T R
Sbjct: 119 TTQNR 123
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -2
Query: 433 HRSPRPDHQRLGSHISGVAALH--TWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLD 260
H +PR Q GS ISG + W +G H ++ SPQ + H ++ +
Sbjct: 397 HNNPRARGQGQGSRISGEMGRNHGGWYSGQLHNSYSSYSASPQRPMEQPEYHPRWRREIV 456
Query: 259 SPSFEQHWPLQANLSTDNAN*K*HDLQSRR 170
S E H Q N + H+LQ+RR
Sbjct: 457 S-DVEDH---QRNRHAGHH----HELQTRR 478
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSR--RN 438
S+ TP+ + A + S++L +P +I++S HR + P + S+ RN
Sbjct: 3 SSVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKTLRN 62
Query: 437 SSSQPTTGSST 405
SS T S T
Sbjct: 63 SSPVVTFVSQT 73
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -1
Query: 518 ASTDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARS 339
A+ ++ R+ PG T + R + P TG G+ HLR R+ R+
Sbjct: 14 ATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERT 73
Query: 338 I 336
+
Sbjct: 74 V 74
>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1077
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 617 IFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRN 438
+F+A +T IP FS STS + + A R +LP N A+ R N
Sbjct: 472 LFTAEDHGSTCIPNFSFSASTSQETIRHKKLQAVKKYRRKVNNSLP---KSNLNATMRNN 528
Query: 437 SSSQP-TTGSS 408
+QP TG +
Sbjct: 529 QENQPVNTGQA 539
>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1108
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 617 IFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRN 438
+F+A +T IP FS STS + + A R +LP N A+ R N
Sbjct: 472 LFTAEDHGSTCIPNFSFSASTSQETIRHKKLQAVKKYRRKVNNSLP---KSNLNATMRNN 528
Query: 437 SSSQP-TTGSS 408
+QP TG +
Sbjct: 529 QENQPVNTGQA 539
>At1g35820.1 68414.m04451 hypothetical protein
Length = 287
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 464 NFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDY 357
NF +++RR SS+Q + GSS + + RGS +
Sbjct: 149 NFWSTARRGSSAQRSGGSSRVSIGSGSRGSQRRQSF 184
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 443 RNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQA 330
+N + P +G S+ V + + D+WR++RSI++
Sbjct: 90 KNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKS 127
>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
protein Common family member:At3g26910 [Arabidopsis
thaliana]
Length = 623
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = -1
Query: 602 RTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQP 423
R P + +P S + S T V ST S L LP P R+ T SSR S P
Sbjct: 482 RNPVSKLPKVSSSPTASPTFV--------STPKISELHELPRPPPRSSTKSSRELGYSAP 533
Query: 422 TTGSSTL 402
S L
Sbjct: 534 LVSRSQL 540
>At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
SP|Q43867; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 242
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 584 IPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNF 459
+P FS++ +SL V P S+ ++TD+ + P R+F
Sbjct: 75 LPDFSKLNISSLHVSPAVGSVCSNTDYAAECIVSILPLLRDF 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,989
Number of Sequences: 28952
Number of extensions: 374313
Number of successful extensions: 1346
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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