Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00854
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    31   0.14 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   6.9  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 110 QDCMPVRFKSIHFIGQPWYVETALAVIKPYLKAKTRERIVLHGNNLSTPM 259
           QD  P R    + I  PW   +A  +IK +L   T ++I + G+N  + +
Sbjct: 197 QDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSAL 246


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 411 SIGELNKAYIQKDSANFSYHANEKSAKSELLREK 512
           +IG+L   Y+ K      Y AN+  AK E  REK
Sbjct: 525 TIGDLFLDYVPKFEPFIKYGANQAIAKFEFEREK 558


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 547 YIDSSLPGHATGISIRFAWFGMHHVISSVIYLCII 651
           ++D   P H   +++ FA+ G HH + +  Y  ++
Sbjct: 209 HLDEYTPDHPIFLTMHFAFHGCHHFLPADKYRLVM 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,799
Number of Sequences: 5004
Number of extensions: 69292
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)