Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00854
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0709 - 23759162-23759455,23759681-23759761,23759847-237599... 31 1.0
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 31 1.0
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 29 4.1
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 4.1
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 4.1
08_01_0482 + 4236865-4236928,4237112-4237329 28 7.2
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 28 9.5
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 28 9.5
>06_03_0709 -
23759162-23759455,23759681-23759761,23759847-23759948,
23760068-23760163,23760256-23760315,23760496-23760549,
23760657-23760695,23761102-23761179,23761476-23761529,
23761797-23761880,23763447-23763475,23763602-23763659
Length = 342
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 56 KQSCSLQAKVLKMMIDCLQDC-MPVRFKSIHFIGQPWYVETALAVIKPYLKAKTRERI-V 229
K S Q K+L I + D P + ++ + + P+ V+KP L+ +TR+++ V
Sbjct: 176 KLSALNQMKILTA-ISTVDDLNYPEKAETYYIVNAPYIFSACWKVVKPLLQERTRKKVHV 234
Query: 230 LHG 238
LHG
Sbjct: 235 LHG 237
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 83 VLKMMIDCLQDCMPVRFKSIHFIGQPWYVETALAVIKPYLKAKTRERIV 229
V + + LQD P FI PW+ A ++ P+L +T+ +I+
Sbjct: 390 VTRQALALLQDNYPEFIAKKIFINVPWWYIAANKMVSPFLTQRTKSKII 438
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 449 VLLYIGFV*FADGRSSSTVIAVTGVVSVGGMFSLRQNSWSQRSELYDGPSPP 294
++L G+V D + V + + G++S S S+ +L DGPSPP
Sbjct: 283 LILSFGYVLLRDPFTFRNVAGILVAIFGMGLYSFFSVSESRDKKLADGPSPP 334
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 374 VSVGGMFSLRQNSWSQRSELYDGPSPPSSAGKISRGKASWE 252
VS G + SW RS L+ G PS + G + WE
Sbjct: 1352 VSYGSCIADLAESWKYRSRLWYGVGIPSKSDTFGGGGSGWE 1392
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 83 VLKMMIDCLQDCMPVRFKSIHFIGQPWYVETALAVIKPYLKAKTRERIV 229
V + + LQD P FI PW+ A ++ P+L +T+ + +
Sbjct: 419 VTRQAVALLQDNYPEFIAKKVFINVPWWYLAANKMMSPFLTQRTKSKFI 467
>08_01_0482 + 4236865-4236928,4237112-4237329
Length = 93
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 420 RRWKVVLYCYSCHWCCKCRRN 358
R W++V YCY C CC R+
Sbjct: 4 RHWRLVCYCYPC--CCLLARD 22
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 334 QEFCRSENIPPTLTTPVTAITVEDDLPSAN*TKPIYKRTVP 456
Q +CRS+ IPPT T +++ A+ T P RTVP
Sbjct: 467 QSWCRSDEIPPTTEAQSTWTYRNNEMNCADRTVP---RTVP 504
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +2
Query: 191 KPYLKAKTRERIVLHGNNLSTPMTLYLLISYRPNLEAKVRHIIQS 325
+ YL +ER+V H ++ +T+++ + + NL++ +++ S
Sbjct: 205 RTYLSEAQKERVVTHIQDIQPEITVFVAVMKKCNLQSPAPYLVIS 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,688,283
Number of Sequences: 37544
Number of extensions: 428721
Number of successful extensions: 1115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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