Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00854
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    28   7.3  
SB_38267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 28   9.7  

>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 20  YVIIVDWTEFTFKQSCSLQAKVLKMMIDC-LQDCMPVRFKSIHFIGQPWYVETALAVIKP 196
           Y   VDW+       C  + +VL  +I   L + MPV+   +H    PW +     +IK 
Sbjct: 294 YFHSVDWSILNSIHGCERKLQVLLYLIKVGLDNIMPVKSIRLHINDPPWIIAEFNHLIKL 353

Query: 197 YLKA 208
             KA
Sbjct: 354 RQKA 357


>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 417 GELNKAYIQKDSANFSYHANEKSAKSELLREKI 515
           G +++ Y+Q ++  + +  NE+S+KS+ LR  I
Sbjct: 215 GVMDELYLQCETGEYGFSMNEQSSKSDPLRTLI 247


>SB_38267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 549 YRQLPSWARHRNIDTFRVVRYASCDIKCNLFMYNTRMRLVRKMKFKIN 692
           Y  +  W R  ++D +  V     + +C  + YNTRMR+    ++ ++
Sbjct: 17  YLNVDIWKRLESVDWYTCVISCERNPECVSYNYNTRMRVCELTRYGLS 64


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 185 VIKPYLKAKTRERIVLHGNNLSTPMTLYLLISYRPNLEAKVRHIIQSVG 331
           ++ P+  A T +R+++ GN+ S+P++    +     L A +RH+  ++G
Sbjct: 623 MLSPHSVA-TNKRVIIDGNDTSSPVSTRWRLVSELLLTAMIRHLRSALG 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,397,304
Number of Sequences: 59808
Number of extensions: 510124
Number of successful extensions: 1471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)