Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00854
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    27   0.26 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    25   0.79 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    25   0.79 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    25   0.79 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    25   0.79 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 413 GRSSSTVIAVTGVVSVGGMFSLRQNSWSQR 324
           G+  +  +   GVV+ GG    + NSWSQ+
Sbjct: 741 GQDMTYSVQGVGVVNAGGWLGQQGNSWSQQ 770


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 308 RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 351


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 308 RSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 351


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNSRGRPSIGEL--NKAYIQK 446
           R+  P+++S     S+ YN +++YN+  + +  +L  N  YI++
Sbjct: 75  RSKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQ 118


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 321 RALAPRVLSK*KHSSDTYNTSDSYNS 398
           R+  P+++S     S+ YN +++YN+
Sbjct: 75  RSKEPKIISNNNSLSNNYNYNNNYNN 100


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 1    PEPSQRIRNYSGLDRV 48
            P PS R RN  G DR+
Sbjct: 1379 PSPSDRGRNDDGSDRL 1394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,429
Number of Sequences: 438
Number of extensions: 4691
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)