Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00853
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    28   1.5  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   5.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.9  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -2

Query: 556 DGLTMPTVDYSIIQSRFNIMMMNGLFIMVFCNILGVFK---NYTFNFDESLAFFVSTVLL 386
           D L++P++  S+ +  FN+    G F ++  N+L  F+       +FD+ + +F S + +
Sbjct: 235 DALSIPSLVLSLQEELFNLCQQTGTFYLLQHNLLQNFEFENPIKLHFDKIIPYF-SRLTV 293

Query: 385 CTHKHNGWSF 356
            T  +  + F
Sbjct: 294 LTFSNRAFIF 303


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 430 NFDESLAFFVSTVLLCTHKHN---GWSFFSFNS 341
           N D + +F++     CT K N    WSF SFNS
Sbjct: 169 NADATNSFYLDEPEFCTIKGNIYSNWSFLSFNS 201


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 139 DWVIENAISYDND 177
           DW++ENAI YD D
Sbjct: 245 DWIVENAIYYDAD 257


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 657  FHSYEHK*PNDLINFTNHTHDSI 589
            FH   HK PN++I    H  DS+
Sbjct: 1065 FHKLSHKNPNEIIRMILHCDDSM 1087


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 345 LKEKKLQPLCLCVHSRTVLTKNAKDSSKLN 434
           LKE + Q   L VH  T LTKN   SS LN
Sbjct: 49  LKEVERQITDLIVHEETTLTKNV--SSSLN 76


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 472  VFCNILGVFKNYTFNFDESLAFFVSTVLLCTH 377
            V   ++GVF NY+  F  +       +L CTH
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTH 1078


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = -3

Query: 597 DSIVTTCRASVLSQMGSQCPPLITALYKVAL 505
           + ++ TC ++V++ +G++C P +  +    L
Sbjct: 791 EKVILTCFSTVVNALGTRCKPYLPQIVSTIL 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,925
Number of Sequences: 5004
Number of extensions: 57969
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)