Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00853
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1191 + 25096735-25096737,25097544-25098258,25099287-25099459     29   2.6  
05_03_0544 + 15239186-15239589,15242963-15243188                       29   2.6  
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703...    29   3.5  
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148...    29   4.6  
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    28   8.1  

>08_02_1191 + 25096735-25096737,25097544-25098258,25099287-25099459
          Length = 296

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 DDWVIENAISYDNDEFDDKKAASRVRRKNKKYLGFDF 246
           DD   ++A S D  E D       +RR+NKKY+G D+
Sbjct: 258 DDNKADDAQSEDGLEEDTLPRGKGIRRRNKKYMGPDW 294


>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 462 IFWV-FLKTIHLTL-MNL*RSLLVQFCCAHTNITAGVSFLLT 343
           IF V  ++  H TL +++  SLL    C H NI  GVSF LT
Sbjct: 162 IFGVNLIQVTHFTLCVDISLSLLGYHACYHENIMLGVSFQLT 203


>04_04_1358 +
           32869222-32869306,32869947-32870008,32870301-32870393,
           32870640-32870761,32873139-32873167,32873586-32873891,
           32873977-32874035,32874148-32874279,32874414-32874455,
           32874560-32875093,32875189-32875379,32875538-32876027,
           32876273-32876335,32876704-32876805,32876895-32877215,
           32877294-32877386,32877484-32877585,32877718-32877822,
           32877933-32878066,32878429-32878612,32879226-32879357,
           32879447-32879559,32879628-32879709,32880328-32881992
          Length = 1746

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 48  SQETRQRGGQREKETQETVFGAGRHQNRTRRLGHRECNL 164
           + E ++  G  EKET  T+ G G+H  + +++  +EC++
Sbjct: 626 ASEDKKNAGHVEKET--TIKGLGKHFEQLKKIKKKECHV 662


>01_06_1596 -
           38514278-38514346,38514547-38514705,38514776-38514898,
           38514985-38515047,38515248-38515352,38515487-38515586,
           38515716-38515786,38516329-38516385,38516830-38516907,
           38516975-38517049,38517180-38517230,38517453-38517466,
           38517516-38517616,38517703-38517764,38518346-38518372,
           38518901-38519581
          Length = 611

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 38  LRIVPRNASKRRAAGKRNARDCLRG----GTTSKPNQTIGSSRMQSPMTTMSLMTRKQRP 205
           LRIV + A  R   G R  R  L           P++  GS R+ + +     +    RP
Sbjct: 505 LRIVAKKAIARNT-GARGLRAILESLLLEAMYEIPDEKTGSERVDAVVVDEEAIGSIDRP 563

Query: 206 GCGEKI 223
           GCG KI
Sbjct: 564 GCGAKI 569


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 115 DDIKTEPDDWVIENAISYDNDEFDD 189
           D   T  +DW++   +S DND+ DD
Sbjct: 502 DTFGTRDEDWLVYKKMSKDNDDDDD 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,363
Number of Sequences: 37544
Number of extensions: 362894
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)