Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00853
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)                      30   1.5  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       28   8.3  
SB_30991| Best HMM Match : DUF11 (HMM E-Value=2.9)                     28   8.3  
SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
          Length = 386

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 387 CAHTNITAGVSFLLTLFVYCDTP*THPIREKYPKNHK 277
           C  +NI++G+S L   +VY D   THP   + P   +
Sbjct: 113 CVRSNISSGLSSLPLPYVYVDNVPTHPSTGRLPTGER 149


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 38  LRIVPRNASKRRAAGKRNARDCLRGGTTSKPNQTIGSSRMQSPMTT 175
           L I P+ AS   ++ +  +  CL G T+   N +IGSS    P  T
Sbjct: 793 LAIEPQQASTSASSVEALSPRCLEGETSESDNVSIGSSSSAGPENT 838


>SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 3   ELHSRGVPASGA*GSSQETRQRGGQREKETQETVFGAGRHQNRTRR 140
           E  ++G P S   G   + R+ GG+RE+         G   N+ RR
Sbjct: 174 ERDAKGRPESARSGGRGDDRRSGGRRERRENANSDSRGPRDNKNRR 219


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 51  QETRQRGGQREKETQETVFGAGRHQNRT 134
           +E +  GG+ E+E +ETV+  G  +  T
Sbjct: 514 EEAQSNGGEEEEECEETVYSPGEREADT 541


>SB_30991| Best HMM Match : DUF11 (HMM E-Value=2.9)
          Length = 707

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   RTT*SRSTSI-WCLRIVPRNASKRRAAGKRNARDCLRGGTTSKP 130
           RT  SR+ S   C R VPR A KR    K+NA +   G   + P
Sbjct: 541 RTAWSRTYSQKTCARFVPRLAIKRLVTPKKNALNAAHGAKYTIP 584


>SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/66 (19%), Positives = 33/66 (50%)
 Frame = -2

Query: 547 TMPTVDYSIIQSRFNIMMMNGLFIMVFCNILGVFKNYTFNFDESLAFFVSTVLLCTHKHN 368
           T+   ++ +I S  +I+  +G+   ++ + L ++ ++  N  + L    + V  C H+ N
Sbjct: 358 TVEMSEFDVI-SEDDIIARHGILYHLYADDLQLYVSFRGNSQDELLMAKTKVECCVHEIN 416

Query: 367 GWSFFS 350
            W  ++
Sbjct: 417 AWMVYN 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,823
Number of Sequences: 59808
Number of extensions: 441230
Number of successful extensions: 1215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)