Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00853
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03450.1 68417.m00472 ankyrin repeat family protein contains ...    28   5.1  
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof...    28   6.8  
At5g60790.1 68418.m07627 ABC transporter family protein similar ...    27   8.9  

>At4g03450.1 68417.m00472 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 641

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 418 SLAFFVSTVLLCTHKHNGWSFFS--FNSVCLLRYTIDSSDP*KIPKKPQGPLLRNI 257
           S AFF   V   T KHN W F S  F S+  L        P  IP+ P  P L+ I
Sbjct: 554 SSAFFCGVV--ATTKHNPWLFDSIIFISIIFLFVVAYLLAPYAIPQFPGTPFLQRI 607


>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
           profile: PF04283 protein of unknown function (DUF439)
          Length = 1197

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 154 NAISYDNDEFDDKKAASRVRRKNKKY 231
           NA+ Y ND F D +   ++R+K+ KY
Sbjct: 15  NALRYANDVFGDPEELLKLRKKDLKY 40


>At5g60790.1 68418.m07627 ABC transporter family protein similar to
           ABC transporter homolog PnATH GI:7573600 from [Populus
           nigra]
          Length = 595

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 56  NASKRRAAGKRNARDCLRGGTTSKPNQTIGSS 151
           +ASK++AA K+ A    RGG  + P+++  +S
Sbjct: 4   DASKKKAAQKKAAAAAKRGGKAAAPSKSAATS 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,633
Number of Sequences: 28952
Number of extensions: 301017
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)