Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   1.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    23   3.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.4  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 185 GVKNQNRGVCL---PLSLSLRIK*KKTALPSMKIKVSLRGERRSHPFISKVRTQYSNT 21
           G  NQ  GV +   PL   +R+K  + A   ++  V  R  R SH  +SK+  +Y  T
Sbjct: 40  GRVNQLGGVFINGRPLPNHIRLKIVEMAANGIRPCVISRQLRVSHGCVSKILNRYQET 97



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 423 CSLRRKFRVSNGPVSATSTLSSESG 349
           C + R+ RVS+G VS       E+G
Sbjct: 74  CVISRQLRVSHGCVSKILNRYQETG 98


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 677 ERGTTAPDTSNTVSRPE--AGSPVKSRADTPTTPR 579
           + G+  P+++ + + PE  A SP      TP++PR
Sbjct: 33  DTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPR 67



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 236 RPSTPPTGSP 207
           +P TPP+G P
Sbjct: 228 KPGTPPSGEP 237


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 TERAANKHLYSGFSHRHVFPRKLG 211
           T+R  N+ L  G   +HV P  +G
Sbjct: 24  TQRVQNQPLVIGCDEKHVSPHVIG 47


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 362 HRSQDFRYYCTEHRHR 315
           HR+ D  ++C+ H H+
Sbjct: 339 HRTVDDYFFCSPHPHK 354


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 227 TPPTGSPVSLETRGGVKNQNRGVCLPLSLSLRIK*KKTALP 105
           TP + +P   E RGGV ++  GV   L +    +  +T  P
Sbjct: 9   TPTSSAPAFSEQRGGVISE--GVASSLQVVALFQLSETTAP 47


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -2

Query: 671 GTTAPDTSNTVSRPEAGSPVKSRADTPTTP 582
           G + PD     S    G PV     +P TP
Sbjct: 66  GASTPDVRPPSSSLSYGGPVNDDVRSPGTP 95


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -2

Query: 671 GTTAPDTSNTVSRPEAGSPVKSRADTPTTP 582
           G + PD     S    G PV     +P TP
Sbjct: 222 GASTPDVRPPSSSLSYGGPVNDDVRSPGTP 251


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 662 APDTSNTVSRPEA 624
           AP TS  V RP+A
Sbjct: 38  APSTSTAVQRPQA 50


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 248 QAGLRPSTPPTGSP 207
           +  + P+TPPT SP
Sbjct: 90  KVSVSPTTPPTPSP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,409
Number of Sequences: 336
Number of extensions: 3766
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)