Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00852
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.83
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 28 1.1
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 27 1.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 2.5
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 27 3.3
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.4
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 26 4.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 5.8
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 7.7
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 7.7
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 197 PRKLGSQSVAWKAEALPVRTGSLSELYIK 283
PR + +Q VAWK + R +SEL+IK
Sbjct: 569 PRSMDAQFVAWKGACIYNRIRIVSELWIK 597
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 223 HRLAPQFPWKHVAV*KTRIEVFVCRSLCLSASNRKRRHCPA*RSRSPYGANAG 65
+RLA ++P H+A TR+EV+ C + L+ K+ + YG AG
Sbjct: 158 NRLAKEYPLAHLADPNTRVEVW-CSNDYLNMGGHKKIREAMHQCIETYGGGAG 209
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 502 PAGNA*EALSLPFARHSAQTTSLYIPM*PPKK--IPSLKWASLSD 374
P G+A + SLP H A SL++P P K I S ++A++ +
Sbjct: 231 PLGSAKQLSSLPELLHRADFVSLHVPASPETKNMISSKEFAAMKE 275
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 2.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 599 DTPTTPRFAGRT*WGPTRSAWRG 531
++P TP+ G+ + PT+ W G
Sbjct: 498 NSPRTPKIVGKMRYNPTKHCWEG 520
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 7 LFVNLVFEYWVRTLEMKGWLRRSPRKETLIFMLGSAVFF 123
L L+FE VR +E W P +I + G+ FF
Sbjct: 252 LVAGLIFEGPVRFIESPAWKEFGPFMSVVILVPGTLAFF 290
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 212 SPVSLETRGGVKNQNRGVCLPLSLSLRIK*KKTALPSMKIKVSLRGERRSHPFISKVRTQ 33
SP+ RG K + RG LP+ +LR+K K LR ER S F K+R++
Sbjct: 207 SPIP-SRRGRRKRKMRGPILPVKKNLRVK---------KAMSPLRAERNSPDFRRKLRSR 256
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 245 AGLRPSTPPTGSPVSLETRGGVK 177
AG++P+ G+ VSLE GGVK
Sbjct: 397 AGVKPNLRYLGNAVSLEKDGGVK 419
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 236 EALPVRTGSLSELYIKGYFKTFRRGVCDDDAPCSNT*NPDSDESVEVA 379
+ LP+ E Y K F+ FR CD PC + D + + E A
Sbjct: 319 KGLPLPNNGACEHYKKS-FRWFRFSCCDRVYPCDECHDADQNHTFEHA 365
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Frame = +2
Query: 227 WKAEALPVRTGSLSELYIKGYFK--------TFRRGVCDD--DAPCSNT*NPDSDESVEV 376
WK E+ P TG+ ++ + + K + G C + C N PDS S +
Sbjct: 612 WKQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSPPNNECFNDKEPDSSSSTLI 671
Query: 377 AETGPFETRN 406
++ E RN
Sbjct: 672 SDRQELEYRN 681
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 97 RSRSPYGANAGAILSFPKFEPNIQTPNS 14
R+ S +G+N ++ S EP+++ P S
Sbjct: 169 RNSSTFGSNPNSVFSAQPTEPSVEPPTS 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,935
Number of Sequences: 5004
Number of extensions: 63144
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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