Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189...    30   1.5  
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    30   2.0  
01_01_0554 - 4073313-4073332,4073450-4073511,4074624-4074762,407...    29   3.4  
12_01_0478 + 3752617-3753006,3753708-3753780,3753892-3753959,375...    29   4.5  
01_01_0981 + 7766025-7766753                                           29   4.5  
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182...    28   7.9  

>06_03_1001 +
           26817231-26818246,26818341-26818525,26818614-26818917,
           26819956-26820041,26820141-26820298,26820420-26820496,
           26820586-26820652
          Length = 630

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 333 HGASSSHTPRRKVLKYPLIYNSDKDPVRTGRASAFHATDWLPSFLGN 193
           +GAS++ TPR   L    IY+       T RAS+F+  D+   F G+
Sbjct: 239 YGASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAMFSGS 285


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 249 SARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTPMKALKSLRLAH 392
           + +G  L Y+ +  + + G+  +M  L   IP  L  ++ LKSL L+H
Sbjct: 403 TTKGENLTYMGEPLVLMTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSH 450


>01_01_0554 -
           4073313-4073332,4073450-4073511,4074624-4074762,
           4074819-4075000,4075097-4075317
          Length = 207

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 677 ERGTTAPDTSNTVSRPEAGSPVKSRADTPTTPRFAGRT*WGPTRS 543
           +R  ++P +S+     +  SP+ + AD P  P+ A    W P RS
Sbjct: 42  DRKRSSPSSSDAADAADNSSPLAAAADAPPAPK-ARVVGWPPVRS 85


>12_01_0478 +
           3752617-3753006,3753708-3753780,3753892-3753959,
           3754577-3754665,3755108-3755305,3755383-3755527,
           3755673-3755840,3756174-3756341,3756527-3756717,
           3757128-3757266
          Length = 542

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 257 PCGQAGL-RPSTPPTGSPVSLETRGGVKNQNRGVC 156
           PC    L RP  PP+   + +E  GG+  Q   +C
Sbjct: 145 PCVNRKLIRPELPPSNGYLMIEANGGLNQQRLSIC 179


>01_01_0981 + 7766025-7766753
          Length = 242

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 618 RTCLWSRYCIACVRGCCSTLAS 683
           +TC   RYC++C R  CS   S
Sbjct: 25  QTCRRDRYCVSCARAFCSHCCS 46


>08_01_0227 +
           1827461-1827674,1827844-1828143,1828272-1828434,
           1828453-1828489,1829207-1829737,1830677-1830829
          Length = 465

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 401 ESQMGQS-QRLQRFHRSQDFRYYCTEHRHRTPH 306
           E Q GQ+ Q +  F R+QD  Y+  + + +TPH
Sbjct: 413 ELQCGQTGQSISSFDRNQDSLYFPLKSKMKTPH 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,361
Number of Sequences: 37544
Number of extensions: 476967
Number of successful extensions: 1391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)