Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29589| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     32   0.38 
SB_59646| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_7886| Best HMM Match : Cbl_N3 (HMM E-Value=4.9)                     31   1.1  
SB_55802| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 29   2.7  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_29589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVSLETR 189
           CG AG  P+TPPT  PV+ E R
Sbjct: 129 CGNAGAAPTTPPTTPPVANECR 150


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVSLETR 189
           CG AG  P+TPPT  PV+ E R
Sbjct: 161 CGNAGAAPTTPPTTPPVANECR 182



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVS 201
           CG AG  P+TPPT  PV+
Sbjct: 298 CGNAGAAPTTPPTTPPVA 315



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVS 201
           CG AG  P+TPPT  PV+
Sbjct: 446 CGNAGAAPTTPPTTPPVA 463


>SB_59646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVSLETR 189
           CG AG  P+TPPT  PV+ E R
Sbjct: 26  CGNAGAAPTTPPTTPPVANECR 47


>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVSLETR 189
           CG AG  P+TPPT  PV  E R
Sbjct: 267 CGNAGAAPTTPPTTPPVVNECR 288


>SB_7886| Best HMM Match : Cbl_N3 (HMM E-Value=4.9)
          Length = 667

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 37  VRTLEMKGWLRRSPRKETLIFMLGSAVFFYLMRRDRESGKQTPLFWFFTPPR 192
           + TL    WL RSPRK+ +   L +  + Y   R+++ G      W + PPR
Sbjct: 445 IGTLYNGTWLYRSPRKQDM-GTLYNGTWLYRPPREQDIGMLYNGTWLYRPPR 495



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 43  TLEMKGWLRRSPRKETLIFMLGSAVFFYLMRRDRESGKQTPLFWFFTPPR 192
           TL    WL R PR++  I ML +  + Y   R+++ G      W + PPR
Sbjct: 465 TLYNGTWLYRPPREQD-IGMLYNGTWLYRPPREQDIGMLYNGTWLYRPPR 513



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 61  WLRRSPRKETLIFMLGSAVFFYLMRRDRESGKQTPLFWFFTPPR 192
           WL R PR++  I ML +  + Y   R+++ G      W + PPR
Sbjct: 489 WLYRPPREQD-IGMLYNGTWLYRPPREQDIGMFYNGTWLYRPPR 531



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 61  WLRRSPRKETL----IFMLGSAVFFYLMRRDRESGKQTPLFWFFTPPR 192
           WL R PR++ +    I ML +  + Y   R+++ G      W + PPR
Sbjct: 239 WLYRPPREQDMGNKDIGMLYNGTWLYRPPREQDIGMLYNGTWLYRPPR 286


>SB_55802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 254 CGQAGLRPSTPPTGSPVS 201
           CG AG  P+TPPT  PV+
Sbjct: 129 CGNAGAAPTTPPTTPPVA 146


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 465  SLDTVHKPLAYIFLCSLRRKFRVSNGPVSATSTLSS 358
            SLDTV  P  Y  + ++ R+FR +  P SA + LSS
Sbjct: 2042 SLDTVSSPDTYPII-AINRRFRRNQHPTSAQTLLSS 2076


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 659 PDTSNTVSRPEAGSPVKSRADTPTTPRFAGRT*WGP 552
           P+ S+T  + E    +KS  DTPT P+F  R+   P
Sbjct: 7   PEISHTAQKDEV---LKSMRDTPTFPKFPARSSHSP 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,210,015
Number of Sequences: 59808
Number of extensions: 534522
Number of successful extensions: 1483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)