Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00852
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro... 35 0.23
BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein. 35 0.23
BC013381-1|AAH13381.1| 530|Homo sapiens KIAA1542 protein protein. 35 0.23
BC004950-1|AAH04950.1| 322|Homo sapiens KIAA1542 protein protein. 35 0.23
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein. 35 0.23
BC129953-1|AAI29954.1| 1219|Homo sapiens PLEKHG3 protein protein. 31 2.9
BC129952-1|AAI29953.1| 752|Homo sapiens PLEKHG3 protein protein. 31 2.9
BC073907-1|AAH73907.1| 760|Homo sapiens PLEKHG3 protein protein. 31 2.9
BC011891-1|AAH11891.2| 694|Homo sapiens PLEKHG3 protein protein. 31 2.9
AK074169-1|BAB84995.1| 804|Homo sapiens FLJ00242 protein protein. 31 2.9
AB011171-1|BAA25525.1| 697|Homo sapiens KIAA0599 protein protein. 31 2.9
BC061903-1|AAH61903.1| 167|Homo sapiens iron-sulfur cluster sca... 30 6.7
BC139907-1|AAI39908.1| 486|Homo sapiens matrilin 3 protein. 30 8.8
AJ224741-1|CAA12110.1| 486|Homo sapiens matrilin-3 protein. 30 8.8
AC079145-2|AAX88937.1| 486|Homo sapiens unknown protein. 30 8.8
AB047077-1|BAB55454.1| 707|Homo sapiens kinase-like protein spl... 30 8.8
>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like protein
rA9 protein.
Length = 1649
Score = 35.1 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 PCLSARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTP 359
PC P + +IL+G+L L G G A T+ A +P LTP
Sbjct: 1490 PCALVSQPTVQFILQGSLPLVGCGAAQTL--APVPAALTP 1527
>BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.
Length = 1080
Score = 35.1 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 PCLSARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTP 359
PC P + +IL+G+L L G G A T+ A +P LTP
Sbjct: 921 PCALVSQPTVQFILQGSLPLVGCGAAQTL--APVPAALTP 958
>BC013381-1|AAH13381.1| 530|Homo sapiens KIAA1542 protein protein.
Length = 530
Score = 35.1 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 PCLSARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTP 359
PC P + +IL+G+L L G G A T+ A +P LTP
Sbjct: 371 PCALVSQPTVQFILQGSLPLVGCGAAQTL--APVPAALTP 408
>BC004950-1|AAH04950.1| 322|Homo sapiens KIAA1542 protein protein.
Length = 322
Score = 35.1 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 PCLSARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTP 359
PC P + +IL+G+L L G G A T+ A +P LTP
Sbjct: 163 PCALVSQPTVQFILQGSLPLVGCGAAQTL--APVPAALTP 200
>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
Length = 1654
Score = 35.1 bits (77), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 PCLSARGPCLNYILKGTLKLFGVGCAMTMLRAVIPKILTP 359
PC P + +IL+G+L L G G A T+ A +P LTP
Sbjct: 1495 PCALVSQPTVQFILQGSLPLVGCGAAQTL--APVPAALTP 1532
>BC129953-1|AAI29954.1| 1219|Homo sapiens PLEKHG3 protein protein.
Length = 1219
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 1007 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 1041
>BC129952-1|AAI29953.1| 752|Homo sapiens PLEKHG3 protein protein.
Length = 752
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 540 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 574
>BC073907-1|AAH73907.1| 760|Homo sapiens PLEKHG3 protein protein.
Length = 760
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 548 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 582
>BC011891-1|AAH11891.2| 694|Homo sapiens PLEKHG3 protein protein.
Length = 694
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 482 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 516
>AK074169-1|BAB84995.1| 804|Homo sapiens FLJ00242 protein protein.
Length = 804
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 592 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 626
>AB011171-1|BAA25525.1| 697|Homo sapiens KIAA0599 protein protein.
Length = 697
Score = 31.5 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SGKQTPLFWFFTPPRVSKETGEPVGGVEGRSPACP 252
+G+ +P +FF P VS+ T P G RSP P
Sbjct: 485 AGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSP 519
>BC061903-1|AAH61903.1| 167|Homo sapiens iron-sulfur cluster
scaffold homolog (E. coli) protein.
Length = 167
Score = 30.3 bits (65), Expect = 6.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +1
Query: 463 RMAGTALLTRCPRASCRRCIQGGPLHADRVGPHHVLPANLGVVGVSARD----FTGEPAS 630
R A +ALL R PR R L+ +V H+ P N+G + ++++ G PA
Sbjct: 10 RRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPAC 69
Query: 631 G 633
G
Sbjct: 70 G 70
>BC139907-1|AAI39908.1| 486|Homo sapiens matrilin 3 protein.
Length = 486
Score = 29.9 bits (64), Expect = 8.8
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 272 IQTRTPCGQAGLRPS-TPPTGSPVSLETRGGVKNQNRGVC--LPLSLSLRIK*KKTALPS 102
++TR P G G RPS P G+P S + G + + GVC PL L I ++ P
Sbjct: 39 LETRGPGGSPGRRPSPAAPDGAPASGTSEPG-RARGAGVCKSRPLDLVFIIDSSRSVRPL 97
Query: 101 MKIKV 87
KV
Sbjct: 98 EFTKV 102
>AJ224741-1|CAA12110.1| 486|Homo sapiens matrilin-3 protein.
Length = 486
Score = 29.9 bits (64), Expect = 8.8
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 272 IQTRTPCGQAGLRPS-TPPTGSPVSLETRGGVKNQNRGVC--LPLSLSLRIK*KKTALPS 102
++TR P G G RPS P G+P S + G + + GVC PL L I ++ P
Sbjct: 39 LETRGPGGSPGRRPSPAAPDGAPASGTSEPG-RARGAGVCKSRPLDLVFIIDSSRSVRPL 97
Query: 101 MKIKV 87
KV
Sbjct: 98 EFTKV 102
>AC079145-2|AAX88937.1| 486|Homo sapiens unknown protein.
Length = 486
Score = 29.9 bits (64), Expect = 8.8
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 272 IQTRTPCGQAGLRPS-TPPTGSPVSLETRGGVKNQNRGVC--LPLSLSLRIK*KKTALPS 102
++TR P G G RPS P G+P S + G + + GVC PL L I ++ P
Sbjct: 39 LETRGPGGSPGRRPSPAAPDGAPASGTSEPG-RARGAGVCKSRPLDLVFIIDSSRSVRPL 97
Query: 101 MKIKV 87
KV
Sbjct: 98 EFTKV 102
>AB047077-1|BAB55454.1| 707|Homo sapiens kinase-like protein splice
variant 2 protein.
Length = 707
Score = 29.9 bits (64), Expect = 8.8
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 680 RERGTTAPDTSNTVSRPEAGSPVKSRADTPTTPRFAGRT*WGPTRSAWRGPP 525
R TTAP +N RP +++ P R A WG S+ +G P
Sbjct: 586 RSHPTTAPTETNIPQRPTPEGHWETQEPPPDGTRLASEYNWGGPESSDKGDP 637
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,376,706
Number of Sequences: 237096
Number of extensions: 2530793
Number of successful extensions: 7540
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7531
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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