Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear recep...    32   0.33 
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    32   0.33 
AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    28   5.4  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    28   5.4  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    28   7.1  

>AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear receptor
           NHR-103 protein.
          Length = 156

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 594 RISARFYRRTCLWSRYCIACVRGCC 668
           R  A F+RR+  WSR  + CV+G C
Sbjct: 29  RSCAAFFRRSATWSRKKVQCVKGTC 53


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 594 RISARFYRRTCLWSRYCIACVRGCC 668
           R  A F+RR+  WSR  + CV+G C
Sbjct: 29  RSCAAFFRRSATWSRKKVQCVKGTC 53


>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 594 RISARFYRRTCLWSRYCIACVRGCCST 674
           R  A F+RR  LWS     C RG C++
Sbjct: 29  RACAAFFRRAALWSPKKAHCPRGNCAS 55


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 594 RISARFYRRTCLWSRYCIACVRGCCST 674
           R  A F+RR  LWS     C RG C++
Sbjct: 29  RACAAFFRRAALWSPKKAHCPRGNCAS 55


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 431  YSYVASEENSESQMGQSQRLQRFHRSQD 348
            YS  +SE  SES   QS +++R H S D
Sbjct: 1797 YSSSSSETESESSAPQSSQVRRLHESLD 1824


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +1

Query: 457 VERMAGTALLTRCPRASCRRCIQGGPLHADRVGPHHVLPANLGVVGVSARDFTGEPASGR 636
           +E     +LL   PR+SCR+      +  +    + VL ++  V G SA D +   + G 
Sbjct: 581 IENPCKLSLLENIPRSSCRQKFVAQGVRGEGREANPVLVSDSSVFGFSAPDLSACESVGS 640

Query: 637 DTVLLVSGAVVPRSRH 684
            +   V  +V   +R+
Sbjct: 641 RSAREVVSSVAGNARN 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,744,005
Number of Sequences: 27780
Number of extensions: 375741
Number of successful extensions: 1159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)