Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 656 DTSNTVSRPEAGSPVKSRADTP 591
           +TSN +S  E+G P +   +TP
Sbjct: 47  ETSNGISHQESGQPKQVDNETP 68


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -3

Query: 88  SPYGANAGAILSFPKFEPNIQT-PNSQ 11
           SPYG   G+  SFP   P   T P SQ
Sbjct: 380 SPYGYPIGSGGSFPSLYPMATTSPQSQ 406


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 447 CALCRANGRDSASY 488
           C  CR NG + A Y
Sbjct: 40  CVFCRNNGEEEAYY 53


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 454 CVERMAGTALLTRCPRASCRRCIQGG 531
           C E  AG  +L  C R S    I  G
Sbjct: 206 CTEATAGAVVLETCQRNSNNSTITAG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,091
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)