Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00852
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    30   1.6  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    30   1.6  
At3g19640.1 68416.m02489 magnesium transporter CorA-like family ...    29   2.9  
At5g50890.1 68418.m06308 hypothetical protein                          28   5.0  
At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family...    28   6.6  
At5g18680.1 68418.m02217 F-box family protein / tubby family pro...    28   6.6  

>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -2

Query: 635 RPEAGSPVKSRADTPTTPRFA----GRT*WGPTRSAWRGPP*MQRRQEARGQRVRSAVP 471
           R   GSP++ R DTP   R A    GR+   P    +R PP    R+  RG  VR   P
Sbjct: 244 RRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRR-IRGSPVRRRSP 301


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -2

Query: 635 RPEAGSPVKSRADTPTTPRFA----GRT*WGPTRSAWRGPP*MQRRQEARGQRVRSAVP 471
           R   GSP++ R DTP   R A    GR+   P    +R PP    R+  RG  VR   P
Sbjct: 251 RRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRR-IRGSPVRRRSP 308


>At3g19640.1 68416.m02489 magnesium transporter CorA-like family
           protein (MRS2-3) low similarity to  SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 484

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -2

Query: 251 GQAGLRPSTPPTGSPVSLETRGGVKNQNRGVCLPLSLSLRIK*KKTALPSMKIKVSLRGE 72
           G+AG   S+   GS    + +  ++NQ+    LP          + A  S++ + +LR E
Sbjct: 162 GEAGTEQSSGDQGSEAKKDAKQSLENQDGSKVLPFEFVALEACLEAASSSLEHE-ALRLE 220

Query: 71  RRSHPFISKVRTQYS 27
             +HP + K+ ++ S
Sbjct: 221 LEAHPALDKLTSKIS 235


>At5g50890.1 68418.m06308 hypothetical protein
          Length = 408

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = -1

Query: 285 PLIYNSDKDPVRTGRASAFHATDWLPSFLGNTWRCEKP--E*RCLFAALSVSP------H 130
           PLI NS++  V     S+    +W+PSF G+    +KP  + R     L V+       H
Sbjct: 273 PLIQNSNEGQVSPSNVSSGFR-NWVPSFYGSN---QKPTVDLRKWVPHLYVNDSDYICCH 328

Query: 129 QIEKDGTAQHEDQGLLTGRTPEPSFHFQSSNPIF 28
             ++DG A+  +       +P  + +FQ++  +F
Sbjct: 329 YTDQDGVAEKREMNNKENNSPVVNTNFQAAAKLF 362


>At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 475

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 145 ESGKQTPLFWFFTPPRVSKETGEPVG 222
           ESG+ +  FWF TPP V  +     G
Sbjct: 133 ESGESSREFWFVTPPHVHPDASYKFG 158


>At5g18680.1 68418.m02217 F-box family protein / tubby family
           protein similar to phosphodiesterase (GI:467578) [Mus
           musculus]; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           contains Pfam PF00646: F-box domain and Pfam PF01167:
           Tub family
          Length = 389

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -2

Query: 89  VSLRGE---RRSHPFISKVRTQYSNTKFT 12
           +SLR +   RRS  ++ KVR+ +  TKFT
Sbjct: 157 ISLRSDDMSRRSQAYVGKVRSNFLGTKFT 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,149
Number of Sequences: 28952
Number of extensions: 355635
Number of successful extensions: 970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)