Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00851
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    53   5e-08
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   2.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.6  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%)
 Frame = +1

Query: 85  YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 240
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKY 75



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 508 SFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 660
           SF +A Q+++ IL    ++    ++YNKF S VS+      LYT K+I  +
Sbjct: 166 SFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINES 216



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 255 QFYERAEVTPPEDDPKQLFVAMTSDRGLCG 344
           + ++ A    PE+  K L VA +SD+GLCG
Sbjct: 81  EVFKEAGTKAPEEG-KTLMVACSSDKGLCG 109



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 347 VHTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPP 508
           +H+ +S++IR  L +P   EN  +  +G+K R  L R   +        IG   P
Sbjct: 111 IHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASP 165


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 631 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 533
           GAS+T    P + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 518  TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 622
            TQ  +PL FSP+ +S+    S + S    +  P P
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP 1437


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 447 RIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTLRTN 334
           R+ ++L P  I+L+FS    LRR   ++ + V T+  N
Sbjct: 183 RLSKNLVPGVISLLFSRDDELRRWACSILSDVKTISDN 220


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 590 SSSLWYRTPSPTCPSTLRSLLRAPQADGIRL 682
           ++S WYR P    PS   +L+R  + D + L
Sbjct: 89  AASKWYRNPRKDFPSQEAALVRKKKRDALIL 119


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 139  KSVKNIQKITQSMKMVSAAKYTRAERDLK 225
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,825
Number of Sequences: 5004
Number of extensions: 72075
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)