Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00851
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 48 8e-06
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 40 0.002
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 33 0.18
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 29 2.9
06_03_1337 + 29434240-29434449,29434504-29434675,29435067-294351... 29 3.9
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 29 3.9
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314 28 6.8
08_02_0730 - 20472851-20473075,20473332-20474285 28 9.0
>07_03_0571 - 19602755-19603831
Length = 358
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Frame = +1
Query: 112 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 255
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALV 84
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +1
Query: 118 KAISIRLKSVKNIQKITQSMKMVSAAK 198
+A+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 282 PPEDDPKQLFVAMTSDRGLCG 344
P D K + VA+TSD+GLCG
Sbjct: 112 PSVDVKKNVIVAITSDKGLCG 132
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 503 PPLSWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCP 631
P SW++ W +P S Q S+ P+ S I ++ LW R PS P
Sbjct: 303 PTKSWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 512 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPST-LRSLLRAP 661
+W W PF T + S+S R+P+P+ P+T R LLR P
Sbjct: 41 AWKTKPWASPFFGFSTPSPSPAHHLFSASSPRRSPAPSAPTTPARRLLRLP 91
>06_03_1337 +
29434240-29434449,29434504-29434675,29435067-29435152,
29435351-29435759,29435893-29436020,29436094-29436153,
29436501-29436650,29436771-29436926,29437045-29437182,
29437270-29437343,29437752-29437853,29437951-29438191,
29438651-29438668
Length = 647
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 368 VIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPLSWTQVSWPLPFS 547
+I + L P +E + I +K+R L + KH + + + PL+ + L F
Sbjct: 390 IITDLLGTPSSETLSRIR-NEKARRYLSTMRKKHAVPFSQKFRNTDPLALRLLERLLAFD 448
Query: 548 PQDTSLVPE 574
P+D S E
Sbjct: 449 PKDRSSAEE 457
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +2
Query: 494 GRLPPLSWTQVSWPLPF-SPQDTSLVPERSFITSSSLWYRTPSPTCPS----TLRSLLRA 658
G LPPLS + PLP D + P+++ +S L R P S T R L A
Sbjct: 90 GDLPPLSGAVLQEPLPLPEGSDHPVSPKKTIEVASLLQERADQPVVTSNSATTTRPQLCA 149
Query: 659 PQADGI 676
P D I
Sbjct: 150 PYDDDI 155
>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
Length = 261
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -1
Query: 577 SFRNQTRILR*EWQWPTDLRPRKRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLS 398
++ N RILR E +W T L+ K+ + ++ N V++V+ R I H D S
Sbjct: 105 NYHNARRILRHEKKWSTYLKKIKKEKDKSVTPNPTHVVNVKD-APKQRPIGHKKAKDECS 163
Query: 397 ----TRFAETVADH 368
T A +V DH
Sbjct: 164 GKRLTSDAISVIDH 177
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 481 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYT 356
++ DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,830,719
Number of Sequences: 37544
Number of extensions: 530215
Number of successful extensions: 1471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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