Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00851
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 29 5.2
SB_3699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_9260| Best HMM Match : EPSP_synthase (HMM E-Value=0) 29 5.2
SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6) 28 6.9
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 28 9.1
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 71.3 bits (167), Expect = 7e-13
Identities = 33/65 (50%), Positives = 49/65 (75%)
Frame = +1
Query: 124 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVSSMKGLRLHLPKMTPS 303
+S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA + + + P
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 304 NCLLL 318
+ +++
Sbjct: 122 HLIVV 126
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +1
Query: 502 PTSFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATS 666
P F +A+ LA IL +G++F +G + YN F+SVVS+ S +Y+ ++ +A S
Sbjct: 189 PPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNAAS 243
Score = 45.2 bits (102), Expect = 6e-05
Identities = 16/55 (29%), Positives = 36/55 (65%)
Frame = +2
Query: 347 VHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPL 511
+H+G++K ++ ++ + N+ ++ GDK++ IL R GK+++ ++G+ PPL
Sbjct: 137 IHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPL 191
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 261 YERAEVTPPEDDPKQLFVAMTSDRGLCG 344
Y++ E+ +DPK L V ++SDRGLCG
Sbjct: 108 YDKVEIKQESEDPKHLIVVLSSDRGLCG 135
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +3
Query: 666 LTAYDSLDSDVLQSYTEFSLASLLF 740
+++YD LDS+V++ Y EF+LAS+LF
Sbjct: 246 MSSYDELDSEVIRCYQEFNLASMLF 270
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 634 YTKKSIESATS*RHTTLWTATYSNPTRSSRWPRC 735
Y K S T+ H LW A+ S+ R +W C
Sbjct: 602 YNNKQYHSCTTFDHYRLWCASTSDYDRDKKWGNC 635
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 186 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 91
+H+ C+ + F+R + G G H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626
>SB_3699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 519 VQERGGRRPISLATLMMCFPYNLCRIPRDLSPTQITLMFSAPGS 388
++ RGGRRP S++ +P P D+ P + LM A GS
Sbjct: 287 IRVRGGRRPRSVSITTSPYP----GFPTDMQPQWMALMCMAQGS 326
>SB_9260| Best HMM Match : EPSP_synthase (HMM E-Value=0)
Length = 465
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 519 VQERGGRRPISLATLMMCFPYNLCRIPRDLSPTQITLMFSAPGS 388
++ RGGRRP S++ +P P D+ P + LM A GS
Sbjct: 276 IRVRGGRRPRSVSITTSPYP----GFPTDMQPQWMALMCMAQGS 315
>SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6)
Length = 463
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 481 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYTPHKPLSEVIATNN 305
+T VL V++L + + DHLD S ++ ADH + + P E + T+N
Sbjct: 260 DTGKVLDVEALTVSCKQCKLHDHLDKDSEEYSLWKADHNDCKANFRGSAPAMEPVETHN 318
>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 267 RAEVTPPEDDPKQLFVAMTSDRGLCG 344
RA TPPE K + + S GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 333 GLCGVYTLVYLK*SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLV 479
G+C + + Y SAT S + ++ ++ V N + +D T +S +
Sbjct: 61 GVCSIISCTYTSNSATSSGSYIISSTTIGVCPTNSCTNLKDSTSGSSTI 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,809,531
Number of Sequences: 59808
Number of extensions: 583613
Number of successful extensions: 1655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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