Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00851
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 81 1e-15
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 81 1e-15
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 81 1e-15
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 2.6
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein. 29 4.6
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 29 4.6
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 29 4.6
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 28 6.0
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 252
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGA 73
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +2
Query: 347 VHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPP 508
VH+ + K +N L+ G + I+V+ +GDKSR LQRLY I+ NEIGR PP
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPP 163
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 288 EDDPKQLFVAMTSDRGLCG 344
++ KQ+ V +TSDRGLCG
Sbjct: 90 QESKKQVLVLITSDRGLCG 108
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 252
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGA 73
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +2
Query: 347 VHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPP 508
VH+ + K +N L+ G + I+V+ +GDKSR LQRLY I+ NEIGR PP
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPP 163
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +1
Query: 499 SPTSFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 657
+P SF DAS A AIL SGY+F +G I++N+FK+VVSY S L + ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 657 RHKLTAYDSLDSDVLQSYTEFSLASLLF 740
+ L+ YDS+D DVLQSY+E+SLA L++
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIY 241
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 288 EDDPKQLFVAMTSDRGLCG 344
++ KQ+ V +TSDRGLCG
Sbjct: 90 QESKKQVLVLITSDRGLCG 108
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 252
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGA 73
Score = 57.6 bits (133), Expect = 9e-09
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +2
Query: 347 VHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPP 508
VH+ + K +N L+ G + I+V+ +GDKSR LQRLY I+ NEIGR PP
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPP 163
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +1
Query: 499 SPTSFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 657
+P SF DAS A AIL SGY+F +G I++N+FK+VVSY S L + ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 657 RHKLTAYDSLDSDVLQSYTEFSLASLLF 740
+ L+ YDS+D DVLQSY+E+SLA L++
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIY 241
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 288 EDDPKQLFVAMTSDRGLCG 344
++ KQ+ V +TSDRGLCG
Sbjct: 90 QESKKQVLVLITSDRGLCG 108
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 503 PPLSWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPQADG 673
PP + P+P + Q + VP +S +SSS P P + L S+ AP G
Sbjct: 1546 PPTNSFGTVLPVPHTFQTSVRVPTQSLFSSSSTTTVQPQPEKKNVLPSIDSAPSTPG 1602
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 503 PPLSWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPQADG 673
PP + P+P + Q + VP +S +SSS P P + L S+ AP G
Sbjct: 1549 PPTNSFGTVLPVPHTFQTSVRVPTQSLFSSSSTTTVQPQPEKKNVLPSIDSAPSTPG 1605
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +1
Query: 70 VVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEG 249
VV V +PN N+ K + VK IQ TQSM+ V + E+ A
Sbjct: 86 VVVGVKREPNSNVQAEKKT---IPKVKTIQTPTQSMESVRLLQ----EKKASATEEQSAE 138
Query: 250 AVSSMKGLRLHLPKMTPS 303
+ S MK +P TP+
Sbjct: 139 SASIMKHFANTIPNSTPT 156
>Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein.
Length = 722
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +1
Query: 70 VVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEG 249
VV V +PN N+ K + VK IQ TQSM+ V + E+ A
Sbjct: 86 VVVGVKREPNSNVQAEKKT---IPKVKTIQTPTQSMESVRLLQ----EKKASATEEQSAE 138
Query: 250 AVSSMKGLRLHLPKMTPS 303
+ S MK +P TP+
Sbjct: 139 SASIMKHFANTIPNSTPT 156
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +1
Query: 70 VVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEG 249
VV V +PN N+ K + VK IQ TQSM+ V + E+ A
Sbjct: 86 VVVGVKREPNSNVQAEKKT---IPKVKTIQTPTQSMESVRLLQ----EKKASATEEQSAE 138
Query: 250 AVSSMKGLRLHLPKMTPS 303
+ S MK +P TP+
Sbjct: 139 SASIMKHFANTIPNSTPT 156
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +1
Query: 70 VVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEG 249
VV V +PN N+ K + VK IQ TQSM+ V + E+ A
Sbjct: 86 VVVGVKREPNSNVQAEKKT---IPKVKTIQTPTQSMESVRLLQ----EKKASATEEQSAE 138
Query: 250 AVSSMKGLRLHLPKMTPS 303
+ S MK +P TP+
Sbjct: 139 SASIMKHFANTIPNSTPT 156
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +1
Query: 61 GTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 240
G Q + VY +P+ + + +K +KN KI ++ V + +++R L
Sbjct: 501 GAQTLNEVYAEPHTQPLVTR-LECLMKEIKNTDKIASILRSVKILRKLKSDRKLVEKFKE 559
Query: 241 GEGAVSSMKGLRLHLPKM 294
AVS L + L K+
Sbjct: 560 VSSAVSKSLPLLVSLRKI 577
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 517 PRKRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFR 362
P + E N ++ D L +++ARFI+ D DVL R A T A+ F+
Sbjct: 272 PYNQIEFRNQAASQTDCLL--QFKESARFITFLDLDDVLIPRLAPTYAEEFQ 321
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
R09H10.5 protein.
Length = 1603
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 490 DWTSPTSFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPL 633
D T+ T+F D + L I TSG+ G+ + S A+ + PL
Sbjct: 1373 DLTNSTTFTDVNTLIRTISTSGHNAGTWSVTVKSTGSCYLQARVNSPL 1420
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,146
Number of Sequences: 27780
Number of extensions: 420729
Number of successful extensions: 1158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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