Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00851
(742 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 48 5e-06
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 42 4e-04
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 40 0.002
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 30 1.9
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 30 1.9
At4g22010.1 68417.m03185 multi-copper oxidase type I family prot... 29 2.4
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 4.3
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 4.3
At5g62580.1 68418.m07855 expressed protein 28 5.7
At4g00960.1 68417.m00130 protein kinase family protein contains ... 28 5.7
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 5.7
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 28 7.5
At4g23230.1 68417.m03350 protein kinase family protein contains ... 28 7.5
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.5
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 9.9
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 27 9.9
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 109 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVSSMKGLRLHL 285
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V + + L
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQL 109
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1
Query: 109 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 255
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLV 109
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/33 (57%), Positives = 29/33 (87%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAK 198
R+++T + + R+KSVKNIQKIT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 499 SPTSFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIE 654
+P ++ S LA IL + EF + +I+YNKF SVV++ + + + + IE
Sbjct: 173 NPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIE 223
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 502 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 359
E S ++ N+ D + + TARF++H H+D+ RF T H +Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 711 CRIGVRRCPESRMPSACGALNRLLSVEGQVGLGVRYHRLE 592
C + R CP++ + A G L R V GQV + R +E
Sbjct: 635 CLLSGRFCPDASLSGAAGTLRRPAEVLGQVHVATRMKPVE 674
>At4g22010.1 68417.m03185 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 541
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 515 WTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPQADGIRLSGQ 691
W++ P+PFSP P+ F + WY+T L + P DG+ ++G+
Sbjct: 143 WSRPRIPVPFSP------PDGDFWLLAGDWYKTNHYVLRRLLEAGRNLPNPDGVLINGR 195
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 486 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 346
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 486 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 346
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At5g62580.1 68418.m07855 expressed protein
Length = 615
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 639 SVEGQVGLGVRYHRLELVINDLSGTKLVS*G--ENGSGQLTC 520
S G GL R H LEL ++++S VS G NGS + C
Sbjct: 483 SQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRNNC 524
>At4g00960.1 68417.m00130 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 372
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 528 LTCVQERGGRRPISLATLMMCFPYNLCRIPRDLSP 424
L CVQE G RP ++A+++ N +PR L P
Sbjct: 303 LLCVQENPGSRP-TMASIVRMLNANSFTLPRPLQP 336
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 502 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 389
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 443 ILQRLYGKHIISVANEIGRLPPLSWTQVSWPL 538
IL +Y ++ N +G L L W V +PL
Sbjct: 922 ILNSMYQLWVLGALNNVGGLTDLGWKMVEFPL 953
>At4g23230.1 68417.m03350 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 507
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 528 LTCVQERGGRRPISLATLMMCFPYNLCRIPRDLSP 424
L CVQE RPI L+T+ M N +P L P
Sbjct: 468 LLCVQEDPAERPI-LSTIFMMLTSNTVTLPVPLQP 501
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 504 HLFLGRKSVGHCHSHLRIRV 563
H F+ K+ GHC++ L++RV
Sbjct: 151 HYFISSKTPGHCYAGLKLRV 170
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 141 FKTDGNGLQSSHIPVWLMVNHRHDLGAH 58
F++DGN L +SH W+ H+ LG H
Sbjct: 1190 FESDGNELSASH---WVSFFHQASLGTH 1214
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 654 LNRLLSVEGQVGLGVRYHRLELVINDLSGTKLVS*GENG 538
+ R+L +EG +G+ LE D+S TK + GE+G
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHG 342
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,208
Number of Sequences: 28952
Number of extensions: 405037
Number of successful extensions: 1098
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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