Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00850
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 486 VKEFLEPLQKLKIILET-TLHQFVNGYYLVHTHLF 385
           +K F+  +  L I+  + TLH   N Y    TH+F
Sbjct: 41  LKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIF 75


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 230 NFAKIEELLQVPPIASSWTCCSLAVY 307
           N AK+ ELL+    AS    CSL  Y
Sbjct: 444 NRAKLSELLRYHTSASGDEACSLKDY 469


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 324 FDSFHWYTAREQHVHELAIGGTCNNSS 244
           ++SFH + + E   +++A  G  +NSS
Sbjct: 477 YNSFHQFYSSESSQNQVAPTGENSNSS 503


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 324 FDSFHWYTAREQHVHELAIGGTCNNSS 244
           ++SFH + + E   +++A  G  +NSS
Sbjct: 425 YNSFHQFYSSESSQNQVAPTGENSNSS 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,300
Number of Sequences: 336
Number of extensions: 4483
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)