Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00850
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    95   7e-20
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    90   2e-18
12_02_0306 + 17307166-17309091                                         29   4.1  
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    29   4.1  
04_01_0601 + 7918220-7918559,7919082-7919158                           28   7.2  
07_01_0986 - 8314733-8314783,8315895-8318381                           28   9.5  
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    28   9.5  
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629...    28   9.5  
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539...    28   9.5  
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333...    28   9.5  
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931     28   9.5  

>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 42/92 (45%), Positives = 59/92 (64%)
 Frame = +1

Query: 226 VKLCEDRRVVTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDK 405
           + L +     +GA  CQ MDM+ PG VPM ++ F    E++ IQN+KILQ  F K+ + K
Sbjct: 34  LSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLRLSK 93

Query: 406 IVPIDKLVKGRFQDNFEFLQWFKKFFDANYGG 501
            + ++KLVKGR  DN EFLQW K++ D+  GG
Sbjct: 94  NIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 125



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 182 LSRHDMLAWVNDCLQSNFAKIEE 250
           + R ++L+W+N  LQ + AK+EE
Sbjct: 19  VGRGEILSWINATLQLSLAKVEE 41


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 39/90 (43%), Positives = 56/90 (62%)
 Frame = +1

Query: 232 LCEDRRVVTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIV 411
           L +     +GA  CQ MD   PG+VPM ++ F    E+E IQN+K+LQ  F K+ + K +
Sbjct: 32  LSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKITKHI 91

Query: 412 PIDKLVKGRFQDNFEFLQWFKKFFDANYGG 501
            ++KL KGR  DN EF+QW K++ D+  GG
Sbjct: 92  EVNKLTKGRPLDNLEFMQWMKRYCDSVNGG 121



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 182 LSRHDMLAWVNDCLQSNFAKIEE 250
           + R+++LAW+N  LQ   +K+EE
Sbjct: 15  VGRNEILAWINTTLQLGLSKVEE 37


>12_02_0306 + 17307166-17309091
          Length = 641

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 628 GLGSSCDFGDRGDGFLSGSGPRGG 557
           G G  C     GDG L G G RGG
Sbjct: 68  GAGVGCSLTGGGDGILCGGGARGG 91


>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 589  GFLSGSGPRGGRAPVPHGQTFSCATASMP 503
            G + GSGPR G AP+ +G   S A  + P
Sbjct: 1826 GSVVGSGPRRGAAPMDYGPRGSAAALASP 1854


>04_01_0601 + 7918220-7918559,7919082-7919158
          Length = 138

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 661 WRSDCCISFPNGLGSSCDFGDRGDGFLSGSGPRGGRAPVPHG 536
           WR    +    G G   D GD GDG  +G    GGR  V  G
Sbjct: 70  WRGGGEVRAVEGEGEGEDGGDGGDGEQAGGESAGGRRVVGGG 111


>07_01_0986 - 8314733-8314783,8315895-8318381
          Length = 845

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 266 AAPVTTLRSSQSLTGDNHSPTLAYHAAIDFL 174
           AAP   L SS S +  +  P  AYHA + FL
Sbjct: 91  AAPFFLLASSSSASAPHPLPADAYHAVLPFL 121


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 664 WWRSDCCISFPNGLGS 617
           WWRS   +S P G+GS
Sbjct: 625 WWRSSARVSVPKGIGS 640


>05_03_0384 -
           13361999-13362120,13362241-13362252,13362921-13362981,
           13363049-13363202,13364653-13364788,13365020-13365290,
           13365654-13365962
          Length = 354

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 498 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 373
           S++G    + P + +LK+ ++ TLH+ +    LVH  LF+ ++
Sbjct: 151 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 193


>05_03_0383 -
           13352924-13353045,13353166-13353177,13353844-13353904,
           13353972-13354125,13355576-13355711,13355943-13356138
          Length = 226

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 498 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 373
           S++G    + P + +LK+ ++ TLH+ +    LVH  LF+ ++
Sbjct: 23  SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 65


>03_06_0027 +
           31131621-31131676,31131681-31132350,31133152-31133319,
           31134771-31134986,31135593-31135909,31136058-31136169,
           31136256-31136492,31136582-31137172
          Length = 788

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = -3

Query: 655 SDCCISFPNGLGSSCDFG-DRGDGFLSGSGPRGGRAPV--PHGQTFSCATASMPHLHS 491
           +D C      LG   D G D   G   GS      A V  P G+ ++C    +P  HS
Sbjct: 22  ADVCDGVKRRLGLGDDEGRDEEAGLAGGSSRPAAAAAVAGPPGECYACTQPGVPSFHS 79


>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
          Length = 218

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 471 EPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLK-FDSF 313
           E L+KLK +LET   +     YL    L    L +F   + FM   C   FD++
Sbjct: 138 ESLEKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,322,770
Number of Sequences: 37544
Number of extensions: 464356
Number of successful extensions: 1353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)