Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00850
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   2e-28
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       31   0.78 
SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   5.5  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   9.6  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              28   9.6  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score =  123 bits (296), Expect = 2e-28
 Identities = 55/85 (64%), Positives = 64/85 (75%)
 Frame = +1

Query: 304 VPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 483
           VP+K++KF    EHEYI NFKILQ+ FKK G DKI+P+DKLVKGRFQDNFEFLQWFKKFF
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFF 102

Query: 484 DANYGGAALTQWRTRRSAHGARGLG 558
           DANYGG    ++    + HG    G
Sbjct: 103 DANYGG---QEYNAVEARHGQTDAG 124


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 555 EPPCPMGRPSRAPLRQCRTSIVGVKEFLE--PLQKLKIILETTLHQFVNG 412
           E P P    + A + +C T+I GVKEFL   P +K    L+  L Q+  G
Sbjct: 290 EGPRPSQGHNPAGILRCPTAIPGVKEFLNSVPAKKCTARLDLALQQYEKG 339


>SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 653 RSPPVNLSRISQSAKGDSKVVDELNHPDKRIESHSR 760
           R  P+N   + QS   DSKV  ++N+ DK+ +  S+
Sbjct: 138 RCDPMNTQGMQQSTTADSKVDVDINYKDKKEKKKSK 173


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 259 GAAYCQFMDMLFPGSVPMKRIKFKTNLE 342
           G A C+ ++ L PG +P  + K KTN E
Sbjct: 456 GMAICELVNALQPGLIPDSKYKEKTNSE 483


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 267  GGTCNNSSIFAKFDWR--QSFTHASISCR-DRFSDVTFVEYTFTAIFTMYQPLIKKFLTV 97
            GGT NN+++ +   W   +S    +++C+ D F     + +TFT I    + L++  +T 
Sbjct: 843  GGTANNNAVLSAAGWNDVESTETVALACQEDYFEKRKTLIFTFTEIAKSCRELLELGVTT 902

Query: 96   N 94
            +
Sbjct: 903  S 903


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
 Frame = -3

Query: 658 RSDCCISFPN---------GLGSSCDFGDRGDGFLSGS 572
           R+D C+S PN         G+G +CD    GDG   GS
Sbjct: 509 RADNCVSVPNADQVDTDSDGIGDACDSDTDGDGVSDGS 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,283,032
Number of Sequences: 59808
Number of extensions: 510655
Number of successful extensions: 1227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)