Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00850
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...   122   4e-28
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    87   1e-17
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41748-4|AAA83337.2|  230|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score =  122 bits (293), Expect = 4e-28
 Identities = 47/82 (57%), Positives = 67/82 (81%)
 Frame = +1

Query: 256 TGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKG 435
           TGA YC F D LFP S+ +K++K+ + LE +++ N+K++Q  +K +GV+K++P+DKL+KG
Sbjct: 43  TGAGYCLFTDFLFPDSIQLKKVKWNSRLELDWLSNWKLVQTTWKNLGVEKVIPVDKLIKG 102

Query: 436 RFQDNFEFLQWFKKFFDANYGG 501
           +FQDNFEFLQWFKK FDANY G
Sbjct: 103 KFQDNFEFLQWFKKLFDANYDG 124



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = +2

Query: 146 VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEEL 253
           VNVY+T  +++NLSRH+ML WVNDCLQ++F KIE+L
Sbjct: 6   VNVYTTASSADNLSRHEMLMWVNDCLQAHFTKIEQL 41


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 36/81 (44%), Positives = 57/81 (70%)
 Frame = +1

Query: 250 VVTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLV 429
           + +GAAYCQ   +LF  ++ +K++KF    E + + N+K+L   +K +G+DK V ++K+ 
Sbjct: 38  MASGAAYCQLTHLLF-NAINLKKVKFNPRSEPDVLNNWKVLTTTWKDLGIDKPVDVEKMK 96

Query: 430 KGRFQDNFEFLQWFKKFFDAN 492
           K +FQDN EFLQWF KF++AN
Sbjct: 97  KAKFQDNMEFLQWFYKFYNAN 117



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 30/38 (78%)
 Frame = +2

Query: 140 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEEL 253
           M VNV+ + VT++ LSR + +AWVN+ L+S+F K+EE+
Sbjct: 1   MVVNVFISAVTTDTLSRKEAVAWVNNLLKSHFTKVEEM 38


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 495 IVGVKEFLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDS 316
           ++G   +   L    ++ +  L  F +  YL+   +F   + YF +   +   ICLK   
Sbjct: 4   LIGNSSYFRVLTPTTVLHDHRLRGFPDNIYLIVYGIFHLLIMYFVLKCAY---ICLKIRV 60

Query: 315 FHW 307
           FHW
Sbjct: 61  FHW 63


>Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical
           protein T09E11.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 280 MDMLFPGSVPMKR-IKFKTNL---EHEYIQNFKILQAGFKK 390
           M M+F G  P K  I F +++   +HEY++ ++I  A FK+
Sbjct: 288 MTMMFMGYEPTKEPILFSSHIPLKDHEYLEQYRIQMADFKE 328


>U41748-4|AAA83337.2|  230|Caenorhabditis elegans Hypothetical
           protein C31H2.3 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 543 PMGRPSRAPLRQCRTSIVGVKEFLEPLQKLKIIL 442
           P GRP + P ++ R+  VGV++F+  +QK  II+
Sbjct: 8   PQGRPPKFPAKRNRS--VGVRDFIVGMQKCIIIV 39


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 477 FLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLY 352
           F+E L+ LK +L++ LH   N Y+L H  +   S   F +LY
Sbjct: 21  FVE-LRSLKNLLKSILHNIENDYFLAHQKVRLYSSHNFVMLY 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,930
Number of Sequences: 27780
Number of extensions: 402316
Number of successful extensions: 1130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)