Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00850
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    27   0.26 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.6  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.6  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -2

Query: 425 SLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AAPVTTL 246
           SL +G ++ T  F     +I    I S +   + ++L    LP N +S+ +     +  +
Sbjct: 418 SLGIGEVI-TVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRI 476

Query: 245 RSSQSLTGDNHSPTLAYH 192
           R+S ++ GD +   + YH
Sbjct: 477 RTSINVLGDGYGAGIVYH 494


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 643 ISFPNGLGSSCDFGDRGDG 587
           +SF +  GS   F + GDG
Sbjct: 378 VSFIDAAGSEVKFDEHGDG 396


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 176 ENLSRHDMLAWVNDC 220
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 643 ISFPNGLGSSCDFGDRGDG 587
           +SF +  GS   F + GDG
Sbjct: 468 VSFIDAAGSEVKFDEHGDG 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,038
Number of Sequences: 438
Number of extensions: 4634
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)