Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00848
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 84  NYKHNSNLARSLSPSSP 34
           N+ +NSN A S+  SSP
Sbjct: 140 NFNNNSNGASSVGSSSP 156


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 84  NYKHNSNLARSLSPSSP 34
           N+ +NSN A S+  SSP
Sbjct: 88  NFNNNSNGASSVGSSSP 104


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 84  NYKHNSNLARSLSPSSP 34
           N+ +NSN A S+  SSP
Sbjct: 271 NFNNNSNGASSVGSSSP 287


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 132 SPVGAFTARSSKYLSFNYKHNSNLARSLSPSS 37
           SPV   +   +  L+ N  HN   + S+ PSS
Sbjct: 325 SPVPGHSTSPNLPLTHNIAHNPYPSHSIYPSS 356


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 CSSTSCSQ*ISKKR 374
           CSS  CSQ ++++R
Sbjct: 350 CSSAGCSQKVAEER 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,027
Number of Sequences: 336
Number of extensions: 3059
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)