Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00848
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    29   0.49 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   4.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   6.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    22   8.8  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 476 NVVFKFVIFAPASSKVLLGKLATAPASSSTLT 381
           NVVF+ +IF P   +V+LGK+ +       +T
Sbjct: 69  NVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVT 100


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 516 YLGWTNFQNYIRLECSF*VCNFRSSLFKSLIGKISYSTCIF-FNIDMESFFY 364
           YLG  +F+N+ +++ S  + N+   +  S +  I  ST ++ F++   +F +
Sbjct: 233 YLGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPSTGLYAFDLQGTAFLW 284


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 486 IRLECSF*VCN--FRSSLFKSLIGKISYSTCIFFN 388
           + L C   VC   FR++      GK+S S C F+N
Sbjct: 30  VTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYN 64


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 551 DIFPLSCSKSRFNKKAF*KKDECICYGLHSPYKSRT 658
           D+FP   SK +F  K F KKD+      +  +   T
Sbjct: 10  DLFPTEISKVKFFTKDFSKKDKLTALDTYRSFPGST 45


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 22.2 bits (45), Expect(2) = 8.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 665  KCLCATYTGNAVHSKCIHL 609
            KC  A    NA  SK +HL
Sbjct: 1218 KCFAAITESNAAGSKALHL 1236



 Score = 21.0 bits (42), Expect(2) = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 566  IEERYQCSFIPYILYFII 513
            + +R     +PYILY II
Sbjct: 1264 VVQRLGVRILPYILYLII 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,346
Number of Sequences: 5004
Number of extensions: 54466
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)