Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00848
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   3e-18
SB_59088| Best HMM Match : AlaDh_PNT_N (HMM E-Value=4.3e-07)           54   2e-07
SB_46315| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.39)           30   2.1  
SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)                   28   6.5  
SB_22468| Best HMM Match : CUT (HMM E-Value=6.8)                       28   6.5  
SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)                    28   8.5  

>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = +3

Query: 510 LDNEIQNVRNEGTLISFLYPAQNQDLIKKLSERKMNAFAMDCIPRISRAQAFDALSSMAN 689
           L  E + ++    L+SFLYPAQN+DL++ L +R + AFA+DCIPRISRAQ FD LSSMAN
Sbjct: 69  LPEEAEMMKEGQKLVSFLYPAQNKDLVEILKKRNITAFAVDCIPRISRAQGFDGLSSMAN 128

Query: 690 VAGYRA 707
           +AGY+A
Sbjct: 129 IAGYKA 134



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 319 DERRXXXXXXXXXXXXXXGFHVNVEEDAGAVANFPNKTFEEAGAKITNLKTTFQ-SDIVL 495
           +ERR              GF V +EE AG  A F +  +  AGA+I ++K  +  SDI+L
Sbjct: 4   NERRVAISPEAVKNYTKQGFKVVIEEGAGLDAKFMDADYVAAGAQIKSVKDVYNTSDIIL 63

Query: 496 KVRPP 510
           KVRPP
Sbjct: 64  KVRPP 68


>SB_59088| Best HMM Match : AlaDh_PNT_N (HMM E-Value=4.3e-07)
          Length = 217

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +1

Query: 271 VSYTKLSIGVPKEIWQDERRXXXXXXXXXXXXXXGFHVNVEEDAGAVANFPNKTFEEAGA 450
           + Y +L+IGVPKE+  +ERR              GF V +EE AG  A F +  +  AGA
Sbjct: 141 IPYDQLTIGVPKEMSANERRVAISPEAVKNYTKQGFKVVIEEGAGLDAKFMDADYVAAGA 200

Query: 451 KITNLKTTFQ-SDIVLK 498
           +I ++K  +  SDI+LK
Sbjct: 201 QIKSVKDVYNTSDIILK 217


>SB_46315| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.39)
          Length = 310

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 153 KTFPKCADPQECFVHINNYQDHGNADCQVALQLRSVNLRSFLHQTK 290
           +  P  +D ++    I+ + DHGN+  +       VNL+ F    K
Sbjct: 116 QVIPGVSDHEQVVARIDQFVDHGNSQERKVFDFNKVNLQDFCRDMK 161


>SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)
          Length = 781

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 206 IVYMHEAFLRIRTFWECFTNI*TTVALLGRL 114
           +VY+ +++L+  T  EC+ N+  TV+L  RL
Sbjct: 312 VVYIDDSYLQGATQLECWNNVKETVSLFQRL 342


>SB_22468| Best HMM Match : CUT (HMM E-Value=6.8)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 534 RNEGTLISFLYPAQNQDLIKKLSERKMNAFAM--DCIPRISRAQAFDALSS 680
           R EG  ++ ++   +++LI+   ER+++AFAM  +   RI  A+  D L S
Sbjct: 83  RTEGGTLADMFDFLSKELIRLQEERRIHAFAMLAERQRRIREAEEGDPLES 133


>SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 206 IVYMHEAFLRIRTFWECFTNI*TTVALLGRL 114
           +VY+ + +L+  T  EC+ N+  TV+L  RL
Sbjct: 83  VVYIDDTYLQGATQLECWNNVKETVSLFRRL 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,388
Number of Sequences: 59808
Number of extensions: 365950
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)