Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00848
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    89   4e-18

>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 39/65 (60%), Positives = 51/65 (78%)
 Frame = +3

Query: 513 DNEIQNVRNEGTLISFLYPAQNQDLIKKLSERKMNAFAMDCIPRISRAQAFDALSSMANV 692
           +NE+  +++  TLISF++P QNQ L+  L++     FAMDC+PRISRAQ FDALSSMAN+
Sbjct: 105 ENEVSKLKSGCTLISFIHPGQNQALLDSLTKTDKTVFAMDCVPRISRAQVFDALSSMANI 164

Query: 693 AGYRA 707
           AGYRA
Sbjct: 165 AGYRA 169



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/80 (36%), Positives = 44/80 (55%)
 Frame = +1

Query: 271 VSYTKLSIGVPKEIWQDERRXXXXXXXXXXXXXXGFHVNVEEDAGAVANFPNKTFEEAGA 450
           + Y+KL + VPKEI+  E+R              G  V +EE+AG +A + N+ +  +GA
Sbjct: 24  IEYSKLKVAVPKEIFPGEKRVSLSPNGVALLKKNGISVLIEENAGVLAGYSNEEYVRSGA 83

Query: 451 KITNLKTTFQSDIVLKVRPP 510
            +      F +DI+LKVRPP
Sbjct: 84  DVGKHNEVFNTDIMLKVRPP 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,549
Number of Sequences: 27780
Number of extensions: 298548
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)