Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00847
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   1.4  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   3.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   7.2  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 138 GY-HRRALPPRHRASLEIAETFKTNYGKDLISEL 236
           GY H  A+P +H+ ++ +AETF  +   DL+ ++
Sbjct: 753 GYSHTLAVPGKHKQNISMAETFSPSPRHDLLRQV 786


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 320 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 448
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 583 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 705
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 670 ALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKARSVSSLSACT 795
           A+  + + DSI+ + + +IE G+ +I +   A S  +L+AC+
Sbjct: 412 AIKLRTLSDSIRADVAENIEMGINSIREQAAASSEVALAACS 453


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 409  ILRTTVRQEPGIGLKRRHVG 468
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,498
Number of Sequences: 5004
Number of extensions: 60730
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)