Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00846
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.22 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.22 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.22 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    27   0.22 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.1  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  QPDSMATITMKPEYPPSEVYS-TSEPPP 142
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  QPDSMATITMKPEYPPSEVYS-TSEPPP 142
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  QPDSMATITMKPEYPPSEVYS-TSEPPP 142
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  QPDSMATITMKPEYPPSEVYS-TSEPPP 142
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 141 GGGSDVLYTSEGGYSGFIVIVAI--ESGW 61
           G G+   YT E G  G+  IV +  E GW
Sbjct: 283 GAGNSGKYTGEAGMLGYNEIVELQKEGGW 311


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 171 TEVDTLCR*AGGGSDVLYTSEGGYSGFIVI 82
           T+ D     +GGG+   YT+E G+  F  I
Sbjct: 773 TQFDIGAPASGGGTPGKYTAEAGFMSFYEI 802



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 144 AGGGSDVLYTSEGGYSGF 91
           +GGG +  YT E G+  +
Sbjct: 353 SGGGKEGTYTKESGFLAY 370


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 56   EHQPDSMATITMKPEYPPSEVYSTSEPPPAY 148
            E  P   A    + E PPS   ST  PPP +
Sbjct: 1780 EEPPSVEAVEEEREEAPPSVHSSTVVPPPQH 1810


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 199 SGRFLLHLGNLYIGFELGRARSSCHQLEQLDA 294
           +GRF  H  NLY  F +    +    L+ +D+
Sbjct: 169 TGRFTFHKKNLYYSFYISDKAARPRSLQFVDS 200


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +2

Query: 74  MATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAA 193
           + T+    E PP   Y   EPP  Y  R        K+ A
Sbjct: 11  LPTVLPHQEVPPPFGYYHEEPPLFYEERPDFVAPYIKVEA 50


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 135 GSDVLYTSEGGYSGF 91
           G  VLYT   GY GF
Sbjct: 481 GDAVLYTIHMGYHGF 495


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,288
Number of Sequences: 336
Number of extensions: 3547
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)