Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00846
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 30 2.3
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 3.1
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 4.0
12_02_1197 + 26915933-26916298 28 7.1
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 7.1
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 7.1
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 28 7.1
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 9.3
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 9.3
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 9.3
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +1
Query: 223 GNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPLPLANAHALHGVP 402
G++ +G +L + +C Q ++ + D+E++ G + D P + ++ G+P
Sbjct: 297 GDVELGNKLNQIEKACEQRDRAAQIKDKEVSEVGGPSDKNLFADDSPSECLSTDSVFGLP 356
Query: 403 P 405
P
Sbjct: 357 P 357
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 361 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 483
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 89 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 175
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 59 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 169
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 138 GGSDVLYTSEGGYSGFIVIVAIESGW 61
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 28.3 bits (60), Expect = 7.1
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +1
Query: 397 VPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEANCRKLTTIRMTHQTRVMRVLSP 576
+P ML L E + S S L K H KI EA K+ H R+ R L+P
Sbjct: 146 LPNMLVPSLKEKKEMSGSITLLLK-----HKGDKIKEATNVKVPVAVHDHFNRMARPLAP 200
Query: 577 TVLL---KRTTNLKRLDRCS 627
+ +RTT KRL S
Sbjct: 201 KPPISDFRRTTRKKRLKEFS 220
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 82 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 2
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 499 INEANCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 672
++ C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 296 MSSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 464 KRLGREDDGWLVSGNTEDSMGGTPCKAWAFASGKGSSATRASFP*ALP 321
+R+GR GW+V G S G+ A G A P +LP
Sbjct: 712 RRIGRRG-GWIVGGGVRRSRSGSVSSVGAGPDGSAKGAGGGGSPSSLP 758
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -2
Query: 124 AVYF-RRRIFRLHSYCSHRVWLV 59
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 181 EDCSTNSGRFLLHLGNL 231
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,775,551
Number of Sequences: 37544
Number of extensions: 444787
Number of successful extensions: 1666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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