Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00846
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2) 33 0.19
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11) 30 2.4
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035) 29 5.5
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 7.2
SB_303| Best HMM Match : SURF6 (HMM E-Value=5) 28 7.2
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 9.5
>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 35.9 bits (79), Expect = 0.036
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 244 ELGRARSSCHQLE-QLDAMLDQELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSV 420
EL + + S QL+ L A ++Q +EGR + +AD AN A + LS V
Sbjct: 208 ELTKLQQSHRQLKTDLAARVEQLKQVEGRRQMLEQQLADVSGMSANKDAEMALNKRLSEV 267
Query: 421 LPETSQPSSSRPSLFKDDALNHAESKINEANCRKL 525
E + S +L D + K EANC+KL
Sbjct: 268 NEELKKAESKNATLIGDLSSARESLKEKEANCKKL 302
>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
Length = 835
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +1
Query: 349 VADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEANCRKLT 528
+ + + H + G PP S TS+P++ PS + D +N I + +
Sbjct: 569 ITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKS 628
Query: 529 TIRMTHQTRVMRVLSPTVL--LKRTTN 603
++R + +R LSP V+ +K+T +
Sbjct: 629 SLRKSFSQGDVRCLSPEVISSVKKTVS 655
>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
Length = 540
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 83 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVEL 259
I+ K P E STS YR+RV ++++AK A V+ F L T ++W+ L
Sbjct: 360 ISSKNRIPVDETSSTSRGGVGYRNRVE-NIKVAKTVAAIVL--MFALCTAPFQTAWIML 415
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +1
Query: 343 ALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEANCRK 522
A + D LA AHAL +PP+ P ++ +R ++ ++ L E ++++A K
Sbjct: 747 ASLLDRENILAEAHALRKLPPLPLDDTPGETRQMLARMAILSNELLVSIELQLSKALMSK 806
Query: 523 LTTIRMTHQTR 555
I+ T +R
Sbjct: 807 RLEIKDTSISR 817
>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 65 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 163
PD AT + PEY + +PPP Y ++
Sbjct: 28 PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 53 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 175
+ H P S + T +P PP +T++ PPAY R S ++Q
Sbjct: 91 RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130
>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
Length = 169
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 391 HGVPPMLSSVLPETSQP-SSSRPSLFKDDALNHAESKINEANCRKLTT 531
+G+PP ++ + +P SS+ PS+F+DD+ A + K+TT
Sbjct: 31 YGIPPSAANFIVPRKRPLSSTAPSVFRDDS-GEARIVAGASGGTKITT 77
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 95 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKI---AALTVVASSFILGTFILASS 247
P PP +PPPA H + + I + + ++ FI G+F L+SS
Sbjct: 92 PAPPPPPAQPAPQPPPAPPHFLPFIIIITTVIITIVINIIIIRFISGSFRLSSS 145
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 256 ARSSCHQLEQLDAMLDQ------ELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSS 417
ARS+ + E+LD + ++ +L LEG G +PL N + + + ML +
Sbjct: 339 ARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHMLDA 398
Query: 418 VLPETSQPSSSRPSL 462
+LP + P +
Sbjct: 399 LLPPAESSNFLGPDV 413
>SB_303| Best HMM Match : SURF6 (HMM E-Value=5)
Length = 353
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 358 EPLPLANAHALHGVP-PMLSSVLPETSQ----PSSSRPSLFKDDALNHAESKINEANCRK 522
EPL + AL P P S VLP Q P++S PS FK+ A S+++EA
Sbjct: 217 EPLGIGGGIALCASPNPSPSLVLPAQQQAPRQPAASSPSFFKNLA-----SEVSEAFSGS 271
Query: 523 LTT 531
LTT
Sbjct: 272 LTT 274
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 9.5
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Frame = +1
Query: 259 RSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPLPLANAHALHGVP-PMLSSVLPETS 435
RS + E DA+LD E + R DEP+ N L G P P+L L + S
Sbjct: 199 RSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPNL-LLRGRPVPILEEDLEKLS 257
Query: 436 QPSS-SRPSLFKDDALNHAESKINEANCRKLTTIRMTHQTR---VMRVLSPTVLLKRTTN 603
+ +R F + + + R L + H+ R ++ PT+ +R
Sbjct: 258 DAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEERSGEQLKGARPTIQHQRNVP 317
Query: 604 LKRLDRCSNCLFSL 645
L+ +++ + L
Sbjct: 318 LRLIEQLKTTINDL 331
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 41 VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 181
V++ + P +I +PE P + ++S PP +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,814,311
Number of Sequences: 59808
Number of extensions: 453055
Number of successful extensions: 1346
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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