Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00846
         (761 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S81027-1|AAB36035.1|  608|Drosophila melanogaster Msr-110 protein.     83   4e-16
AY118587-1|AAM49956.1|  608|Drosophila melanogaster LD44960p pro...    83   4e-16
AE014296-970|AAN12100.1|  608|Drosophila melanogaster CG10596-PB...    83   4e-16
BT001836-1|AAN71591.1|  617|Drosophila melanogaster RH50422p pro...    73   6e-13
AE014296-971|AAF50768.1|  617|Drosophila melanogaster CG10596-PA...    73   6e-13
AE014296-972|AAN12101.1|  625|Drosophila melanogaster CG10596-PC...    48   1e-05
AE014297-4148|AAF56725.2| 1497|Drosophila melanogaster CG5586-PB...    29   6.9  
AE014297-2770|AAF55749.2|  465|Drosophila melanogaster CG5060-PA...    29   6.9  

>S81027-1|AAB36035.1|  608|Drosophila melanogaster Msr-110 protein.
          Length = 608

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  SMATITMKPEYPPSEVYST-SEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASS 247
           SMAT+ MKP+Y  SEVYST SEPPPAY+ R + SV+IAKI A T++ S+FILG+FILASS
Sbjct: 8   SMATVQMKPDYAASEVYSTASEPPPAYK-RQANSVKIAKITAFTIIVSAFILGSFILASS 66

Query: 248 WVE 256
           +++
Sbjct: 67  YLQ 69



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 160 KMPLELDLSDLAAAILRNNKKSRMNCVVERKH 191



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 58  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 106


>AY118587-1|AAM49956.1|  608|Drosophila melanogaster LD44960p
           protein.
          Length = 608

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  SMATITMKPEYPPSEVYST-SEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASS 247
           SMAT+ MKP+Y  SEVYST SEPPPAY+ R + SV+IAKI A T++ S+FILG+FILASS
Sbjct: 8   SMATVQMKPDYAASEVYSTASEPPPAYK-RQANSVKIAKITAFTIIVSAFILGSFILASS 66

Query: 248 WVE 256
           +++
Sbjct: 67  YLQ 69



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 160 KMPLELDLSDLAAAILRNNKKSRMNCVVERKH 191



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 58  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 106


>AE014296-970|AAN12100.1|  608|Drosophila melanogaster CG10596-PB,
           isoform B protein.
          Length = 608

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  SMATITMKPEYPPSEVYST-SEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASS 247
           SMAT+ MKP+Y  SEVYST SEPPPAY+ R + SV+IAKI A T++ S+FILG+FILASS
Sbjct: 8   SMATVQMKPDYAASEVYSTASEPPPAYK-RQANSVKIAKITAFTIIVSAFILGSFILASS 66

Query: 248 WVE 256
           +++
Sbjct: 67  YLQ 69



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 160 KMPLELDLSDLAAAILRNNKKSRMNCVVERKH 191



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 58  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 106


>BT001836-1|AAN71591.1|  617|Drosophila melanogaster RH50422p
           protein.
          Length = 617

 Score = 72.5 bits (170), Expect = 6e-13
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 9/71 (12%)
 Frame = +2

Query: 71  SMATITMKPEYPPSEVYST-SEPPPA----YRH----RVSTSVQIAKIAALTVVASSFIL 223
           SMAT+ MKP+Y  SEVYST SEPPP     + H    R + SV+IAKI A T++ S+FIL
Sbjct: 8   SMATVQMKPDYAASEVYSTASEPPPMGFFNFNHQAYKRQANSVKIAKITAFTIIVSAFIL 67

Query: 224 GTFILASSWVE 256
           G+FILASS+++
Sbjct: 68  GSFILASSYLQ 78



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 169 KMPLELDLSDLAAAILRNNRKSRMNCVVERKH 200



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 67  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 115


>AE014296-971|AAF50768.1|  617|Drosophila melanogaster CG10596-PA,
           isoform A protein.
          Length = 617

 Score = 72.5 bits (170), Expect = 6e-13
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 9/71 (12%)
 Frame = +2

Query: 71  SMATITMKPEYPPSEVYST-SEPPPA----YRH----RVSTSVQIAKIAALTVVASSFIL 223
           SMAT+ MKP+Y  SEVYST SEPPP     + H    R + SV+IAKI A T++ S+FIL
Sbjct: 8   SMATVQMKPDYAASEVYSTASEPPPMGFFNFNHQAYKRQANSVKIAKITAFTIIVSAFIL 67

Query: 224 GTFILASSWVE 256
           G+FILASS+++
Sbjct: 68  GSFILASSYLQ 78



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 169 KMPLELDLSDLAAAILRNNKKSRMNCVVERKH 200



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 67  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 115


>AE014296-972|AAN12101.1|  625|Drosophila melanogaster CG10596-PC,
           isoform C protein.
          Length = 625

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 627 KLPIQFDLDELAGAFLANNQKGRMNCVVERRN 722
           K+P++ DL +LA A L NN+K RMNCVVER++
Sbjct: 177 KMPLELDLSDLAAAILRNNKKSRMNCVVERKH 208



 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 22/38 (57%), Positives = 32/38 (84%)
 Frame = +2

Query: 143 AYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVE 256
           AY+ R + SV+IAKI A T++ S+FILG+FILASS+++
Sbjct: 50  AYK-RQANSVKIAKITAFTIIVSAFILGSFILASSYLQ 86



 Score = 33.1 bits (72), Expect = 0.43
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 LGNLYIGFELGRARSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPL 366
           LG+  +     +A++SC Q++ LD++L++EL LE        L   EPL
Sbjct: 75  LGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKELPRAEPL 123


>AE014297-4148|AAF56725.2| 1497|Drosophila melanogaster CG5586-PB
           protein.
          Length = 1497

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 533 IVVNFLQFAS-FILDSAWLSASSLKRLGREDDGWLVSGNTEDSMGGT 396
           IV  +L F+S F  D  W     L R     +GWL +GN    +G T
Sbjct: 65  IVFKWLSFSSPFFQDEGW----KLNRTNYYQEGWLATGNVRGIVGVT 107


>AE014297-2770|AAF55749.2|  465|Drosophila melanogaster CG5060-PA
           protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 400 VLHAKRGHLLVAKAHPLPGHHF-RRLCLPKRVLGRALHPAALADGMMNELYPTRSQY 233
           VLH  R H+++  + P+       R+C+ +RV GR        +G++ ++     QY
Sbjct: 77  VLHQGRNHVILDASPPMADITLDARVCVRQRVEGRGSGSFVYVEGIITDINQATKQY 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,529,151
Number of Sequences: 53049
Number of extensions: 700394
Number of successful extensions: 2917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)