Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00846
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    29   3.6  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    26   4.0  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    26   4.0  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
 Frame = +1

Query: 166 FGPDREDCSTNSGRFLLHLGNLYIGFEL-GRARSSCHQLEQLDAMLD--QELALEGRA-- 330
           F  +   C  N  R    +  +Y G  +  R  +  H+  +LD  +    E   +G++  
Sbjct: 224 FHKELRSCQNNPQRVQEKMNEMYGGTTIITRYNNKLHRYTRLDYSISPLSEFVKDGQSIT 283

Query: 331 --------YGNDALVADEPLPLANAHALH-GVPPMLSSVLPETSQPSSSRPSLFKD 471
                   YG +  V D+P+ ++       G PP +S ++PE   P+     + KD
Sbjct: 284 LKEYFKNQYGIEITVDDQPIIISEGKPKQPGEPPQVSYIVPELCFPTGLTDEMRKD 339


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 41  VVMEKEHQPDSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSV 172
           +V++K   P ++AT T KP    PP      SEPPPA++    +S+
Sbjct: 275 IVVKKLQAPIALATSTPKPAMCRPPKH----SEPPPAFQDSFVSSI 316


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 26.2 bits (55), Expect(2) = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 424 PETSQPSSSRPSLFKDDALNHAESKINEANCRKLTTIRMTHQT 552
           P T++P S+   LFK         K NEAN R    +  TH T
Sbjct: 400 PTTAEPFSAS-GLFKFTREKRRSKKENEANLRASVCMDDTHST 441



 Score = 21.0 bits (42), Expect(2) = 4.0
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 361 PLPLANAHALHGVPPMLSSVLPETSQPSS 447
           P+  ++ ++ +  PP++++ +PE+ + SS
Sbjct: 339 PVVDSSINSNYSTPPIINNSIPESIKKSS 367


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 26.2 bits (55), Expect(2) = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 424 PETSQPSSSRPSLFKDDALNHAESKINEANCRKLTTIRMTHQT 552
           P T++P S+   LFK         K NEAN R    +  TH T
Sbjct: 383 PTTAEPFSAS-GLFKFTREKRRSKKENEANLRASVCMDDTHST 424



 Score = 21.0 bits (42), Expect(2) = 4.0
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 361 PLPLANAHALHGVPPMLSSVLPETSQPSS 447
           P+  ++ ++ +  PP++++ +PE+ + SS
Sbjct: 322 PVVDSSINSNYSTPPIINNSIPESIKKSS 350


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +1

Query: 298 LDQELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 453
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +1

Query: 298 LDQELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 453
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,173
Number of Sequences: 27780
Number of extensions: 340107
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)