Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00845
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    28   1.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 518 RNTMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSP 393
           R+T+P     +++    + N ++P+S +++P T +  SI SP
Sbjct: 10  RSTLPDYADPDYFEARGERNPVKPQSSNVVPGTSHIGSIKSP 51


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 498 NWGHR-IATLEVKFLDRRKRNISESICQRCFHQSRTKVRGSKAI 626
           NWG   +    +K+ +R + +    +C +C+    TKV+  +AI
Sbjct: 147 NWGSESLKERSLKYSNRLQASNDTGVCVKCYGGMETKVQVCQAI 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,040
Number of Sequences: 5004
Number of extensions: 50725
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)