Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00845
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08) 31 1.2
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.7
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 2.7
SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_19997| Best HMM Match : B12-binding_2 (HMM E-Value=0.68) 28 8.3
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +1
Query: 535 SWIVARETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
SWI R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 550 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 550 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 550 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 550 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +1
Query: 556 TSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 30 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 556 TSAKAFAKGVFINQERKLEVRRRLDT 633
T+AKAFAK VFINQERKLE RRR DT
Sbjct: 3 TTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 528 VKFLDRRKRNISESICQRCFHQSRTKV 608
VKFLD RK N ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 528 VKFLDRRKRNISESICQRCFHQSRTKV 608
VKFLD RK N ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 528 VKFLDRRKRNISESICQRCFHQSRTKV 608
VKFLD RK N ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 62 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 238
T + R ++++ R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +2
Query: 113 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 238
R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +2
Query: 125 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 238
RASL Y K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08)
Length = 289
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 298 FFRTPAHRRYLRKRVVSPRMR 236
FFR+P RRY+RKR V P R
Sbjct: 266 FFRSPMLRRYVRKRFVRPATR 286
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 113 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 238
R ASL Y K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 173 YTKIVAVKKLVVAFVRRAVGAP 238
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 173 YTKIVAVKKLVVAFVRRAVGAP 238
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 173 YTKIVAVKKLVVAFVRRAVGAP 238
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRGCWH 137
++R++ + C A C + RN +RYW W R C H
Sbjct: 75 KRRLIIATLFCVVFIA--CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 280 HRRYLRKRVVSPRMRCTDSAAHKCNYELFNRNNFSIR 170
H + + R ++P + TD HK EL N+N IR
Sbjct: 11 HSKTISNRSLNPSITYTDMHRHKSELELKNKNAGKIR 47
>SB_19997| Best HMM Match : B12-binding_2 (HMM E-Value=0.68)
Length = 413
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 307 EPAFF-RTPAHRRYLRKRVVSPRMRCTDSAAHKCNYEL 197
+PA F R HRRYL+K++ + R TDS A K + ++
Sbjct: 45 KPANFKRNINHRRYLQKQLRNYSKRKTDSPAKKSSNKI 82
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 250 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 152
S R+RCT S + KC + + F W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,317,713
Number of Sequences: 59808
Number of extensions: 400455
Number of successful extensions: 1169
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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