Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00845
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    32   0.45 
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    32   0.45 
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    32   0.45 
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    32   0.45 
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   9.7  

>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 354  PTSTLTEEHRDRILILNRRFLERRLTDDISANV*YHRGCGAPTAR 220
            PT+ + E  RD  +++   F+E    D +S  V  HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 354  PTSTLTEEHRDRILILNRRFLERRLTDDISANV*YHRGCGAPTAR 220
            PT+ + E  RD  +++   F+E    D +S  V  HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 354  PTSTLTEEHRDRILILNRRFLERRLTDDISANV*YHRGCGAPTAR 220
            PT+ + E  RD  +++   F+E    D +S  V  HR CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 354 PTSTLTEEHRDRILILNRRFLERRLTDDISANV*YHRGCGAPTAR 220
           PT+ + E  RD  +++   F+E    D +S  V  HR CG P  R
Sbjct: 402 PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 446


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 307  EPAFFRTPAHRRYLRKRVVS 248
            EP+F RTPAH  YL K + S
Sbjct: 1451 EPSFLRTPAHMTYLAKLMYS 1470


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 184 CCG*KARSCICAPRCRC 234
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 537 LDRRKRNISESICQRCFHQSRTKVRGS 617
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,621
Number of Sequences: 27780
Number of extensions: 300414
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)