Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00845
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   3.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   3.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   3.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   3.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 519 TLEVKFLDRRKRNISESICQRCFHQSRTK--VRGSKAIRYRPSS 644
           +L+  F D+ +++ +  +C+ C  + RTK  +   K++++R SS
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 73  RERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 73  RERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 73  RERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 73  RERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 RKRVVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 152
           R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 73  RERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 532 NSWIVARETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 654
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 543  RRKRNISESICQRCFHQ 593
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,851
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)