Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00844
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   107   2e-24

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  107 bits (257), Expect = 2e-24
 Identities = 51/85 (60%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 LAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-P 432
           L+I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++  
Sbjct: 284 LSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRV 343

Query: 433 NIL*RLGFVFLFTVGGLTGVILANS 507
            +L  +GF+ LFT+GGLTGVIL+NS
Sbjct: 344 PMLYAIGFLILFTIGGLTGVILSNS 368



 Score =  103 bits (246), Expect = 4e-23
 Identities = 46/74 (62%), Positives = 57/74 (77%)
 Frame = +2

Query: 32  AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQER 211
           AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII    
Sbjct: 210 AGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSL 268

Query: 212 GKKETFGCLGIIYA 253
             K  FG  G+++A
Sbjct: 269 AHKPIFGKEGMLWA 282



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 37/74 (50%), Positives = 42/74 (56%)
 Frame = +3

Query: 498 SQFFIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIF 677
           S   +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +F
Sbjct: 366 SNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILF 424

Query: 678 IGVNITFFPQHFLG 719
           IGVNI F PQHFLG
Sbjct: 425 IGVNIVFGPQHFLG 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,854
Number of Sequences: 5004
Number of extensions: 41722
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)