Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00844
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   91   7e-19
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 43/65 (66%), Positives = 55/65 (84%)
 Frame = +1

Query: 313 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 492
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 493 ILANS 507
           ILANS
Sbjct: 61  ILANS 65



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 37/70 (52%), Positives = 43/70 (61%)
 Frame = +3

Query: 510 IDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVN 689
           +D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ +FIGVN
Sbjct: 67  LDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVN 126

Query: 690 ITFFPQHFLG 719
           ITFFPQHFLG
Sbjct: 127 ITFFPQHFLG 136


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = +3

Query: 624 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLG 719
           TG   N    KI F+ +FIGVNITFFPQHFLG
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLG 50


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 292 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 441
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 611 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 700
           + FIY   + FL +KN  F+  YW+   YN F
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,525
Number of Sequences: 59808
Number of extensions: 271627
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)