Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00843
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 118 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 95 1e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 93 3e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 93 4e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 91 1e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 3e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 1e-18
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 88 2e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 5e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 86 5e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 84 3e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 79 6e-16
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 79 8e-16
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 76 6e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 71 2e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 68 1e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 66 4e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 6e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 1e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 63 4e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 63 5e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 5e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 52 8e-08
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 52 1e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 51 2e-07
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 51 2e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 50 5e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 49 1e-06
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.017
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 35 0.017
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 31 0.27
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 28 1.9
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 4.4
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 27 4.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 4.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 26 5.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.7
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 118 bits (284), Expect = 1e-27
Identities = 54/78 (69%), Positives = 66/78 (84%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+SIHGDR QRERE AL+ F+SG+ I+VATAVA+RGLDI NV V+NYDLP ID+YVHR
Sbjct: 458 TSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHR 517
Query: 709 IGRTGRVGNRGKAVSFYD 762
IGRTGR GN G+AV+F++
Sbjct: 518 IGRTGRAGNTGQAVAFFN 535
Score = 83.4 bits (197), Expect = 4e-17
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 430
ERQTLMFSATFP DIQ LA FL +Y+F++VG VG S ++ Q + V EKR+ L +
Sbjct: 364 ERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDI 423
Query: 431 IEENDGKRI-LVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRILRV 592
+ + + L+FVETKR AD + L NSN T+I + + R+R R L +
Sbjct: 424 LHTLPPEGLTLIFVETKRMADTLTDYLLNSN---FPATSIHGDRTQRERERALEL 475
Score = 80.6 bits (190), Expect = 3e-16
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 6 SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRM 185
S ++ YGG +R Q I +GC +L ATPGRL D ++R R+S +++F+VLDEADRM
Sbjct: 282 SWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRM 341
Query: 186 LDMGFMPSIEKMM 224
LDMGF P I ++
Sbjct: 342 LDMGFEPQIRHIV 354
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 95.1 bits (226), Expect = 1e-20
Identities = 39/86 (45%), Positives = 64/86 (74%)
Frame = +1
Query: 499 SHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDL 678
S + ++ ++SIHG + Q +R+ + ++K+G +L+AT+V ARGLD+K++ +VVNYD
Sbjct: 686 SDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDC 745
Query: 679 PKSIDEYVHRIGRTGRVGNRGKAVSF 756
P +++YVHR+GRTGR G+ G AV+F
Sbjct: 746 PNHMEDYVHRVGRTGRAGHTGVAVTF 771
Score = 59.3 bits (137), Expect = 7e-10
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERN--RV-SFGSVRFVVLDEADR 182
++ AYGG ++ Q ++ RG I+V TPGR+ D + N RV + ++VLDEADR
Sbjct: 520 IRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADR 579
Query: 183 MLDMGFMPSIEKMM 224
M D+GF P + +++
Sbjct: 580 MFDLGFEPQVMRII 593
Score = 46.0 bits (104), Expect = 7e-06
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNS---- 418
+RQT++FSATFP ++ LA + L + + VG +++VEQI +EV E + S
Sbjct: 599 DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFSRLLE 657
Query: 419 -LKQLIEENDGKRILVFVETKRNADFIAAML 508
L +L R LVFV+ + +AD + + L
Sbjct: 658 LLGELYNNQLDVRTLVFVDRQESADALLSDL 688
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 93.5 bits (222), Expect = 3e-20
Identities = 39/75 (52%), Positives = 56/75 (74%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IHG+ Q +REEAL F+ G+ +L+AT + ARG+D V +V+N+D P+S+ Y+HRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 715 RTGRVGNRGKAVSFY 759
RTGR GN G+AV+F+
Sbjct: 378 RTGRAGNTGQAVTFF 392
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 GSVLKVA-VAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEAD 179
G+ LK+ ++ ++ + + + + TP RL ++ +SF V F V+DEAD
Sbjct: 141 GTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEAD 199
Query: 180 RMLDMGFMPSIEKMM 224
R+ + GF+ + ++
Sbjct: 200 RLFEPGFIEQTDHIL 214
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 266 MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV-TKYEKRNSLKQLIEEN 442
+FSAT P ++ LA + + + VG+ A+ ++Q + V + K L+Q+I
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNG 285
Query: 443 DGK-RILVFVE 472
+ K R+++FV+
Sbjct: 286 ELKPRVVIFVQ 296
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 93.1 bits (221), Expect = 4e-20
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IHGD Q R +AL +FKSGK +LVAT VAARGLDI V +V+N P +I++YVHRIG
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIG 505
Query: 715 RTGRVGNRGKAVSFY 759
RTGR +G A++F+
Sbjct: 506 RTGRANTKGTAITFF 520
Score = 62.1 bits (144), Expect = 1e-10
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADR 182
G+ LK V YGG Q A+ +++ TPGRL D + + V ++VLDEADR
Sbjct: 262 GTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADR 320
Query: 183 MLDMGFMPSIEKMMLH 230
MLD GF I ++ H
Sbjct: 321 MLDTGFEQDIRNIISH 336
Score = 38.3 bits (85), Expect = 0.001
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEV--TKYEKRNSLK 424
RQT+ FSAT+PE ++ LA FL + + + +G AS ++ QI +E+ K L
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQI-VEILDDPRSKERMLD 404
Query: 425 QLIEE---NDGK--RILVFVETKRNA 487
L+ + + GK +IL+FV K+ A
Sbjct: 405 NLLRKHLSSGGKDDKILIFVLYKKEA 430
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 91.5 bits (217), Expect = 1e-19
Identities = 39/76 (51%), Positives = 56/76 (73%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
+IHGD+ Q ER+ L F++GK I+VAT VA+RG+D+K + V NYD P + ++YVHRI
Sbjct: 398 AIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRI 457
Query: 712 GRTGRVGNRGKAVSFY 759
GRTGR G +G A +++
Sbjct: 458 GRTGRAGAKGTAYTYF 473
Score = 68.5 bits (160), Expect = 1e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 6 SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRM 185
S ++ YGG Q ++ RG I +ATPGRL D ++ N+ + V ++VLDEADRM
Sbjct: 222 SRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRM 281
Query: 186 LDMGFMPSIEKMM 224
LDMGF P I K++
Sbjct: 282 LDMGFEPQIRKIV 294
Score = 65.7 bits (153), Expect = 8e-12
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTKYEKRNSLKQ 427
+RQT+MFSAT+P+++Q LA +LN+Y+ V VG + AS +++QI V +KR L +
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359
Query: 428 LIEE---NDGKRILVFVETKRNADFIAAMLR 511
IEE + ++L+F TKR AD I LR
Sbjct: 360 DIEEVLKDRDNKVLIFTGTKRVADDITRFLR 390
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 90.2 bits (214), Expect = 3e-19
Identities = 35/82 (42%), Positives = 58/82 (70%)
Frame = +1
Query: 511 EQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSI 690
E +S+HG+ Q+ER+ +Q+F+ G +L+ T + ARG+D++ V +V+NYDLP +
Sbjct: 282 EANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANR 341
Query: 691 DEYVHRIGRTGRVGNRGKAVSF 756
+ Y+HRIGR+GR G +G A++F
Sbjct: 342 ENYIHRIGRSGRFGRKGVAINF 363
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GGT+V + + G H++ TPGR+ D + R + +V+ ++LDEAD +L+ GF I
Sbjct: 125 GGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQI 184
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q ++ SAT P+D+ + +F N + + V ++Q FI V K E K ++L L
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 255
Query: 434 EENDGKRILVFVETKRNADFIAAMLRNSN 520
+ + ++F ++R D++ +R +N
Sbjct: 256 DTLTITQAVIFCNSRRKVDWLTEKMREAN 284
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 88.6 bits (210), Expect = 1e-18
Identities = 37/75 (49%), Positives = 55/75 (73%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
++HG + Q +RE A++ ++ ILVAT +A RG+DI NV +V+NY++ KSI++Y HRI
Sbjct: 545 TLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI 604
Query: 712 GRTGRVGNRGKAVSF 756
GRTGR G G A++F
Sbjct: 605 GRTGRAGKSGTAITF 619
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/64 (48%), Positives = 41/64 (64%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GG A Q +++G HI+VATPGRL D +ER +VV+DEADRMLDMGF +
Sbjct: 361 GGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDV 420
Query: 213 EKMM 224
K++
Sbjct: 421 NKIL 424
Score = 50.4 bits (115), Expect = 3e-07
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKR-NSLKQL 430
RQT+MFSAT P + +LA +L + + +G +G A VEQ ++ K+ ++++
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 431 IEEND-GKRILVFVETKRNADFIAAML 508
+E N I++FV KRN + IA L
Sbjct: 510 LESNRFSPPIIIFVNLKRNIEAIAKQL 536
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 87.8 bits (208), Expect = 2e-18
Identities = 35/87 (40%), Positives = 58/87 (66%)
Frame = +1
Query: 496 SSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYD 675
+ + E+ SS+HGD Q +R+ + F++G IL+ T + ARG+D++ V +V+NYD
Sbjct: 275 TEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYD 334
Query: 676 LPKSIDEYVHRIGRTGRVGNRGKAVSF 756
LP + + Y+HRIGR GR G +G +++F
Sbjct: 335 LPANRENYIHRIGRGGRFGRKGVSINF 361
Score = 60.1 bits (139), Expect = 4e-10
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GGT VR + G H++V TPGR+HD ++R + +V+ VLDEAD ML GF I
Sbjct: 123 GGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQI 182
Query: 213 EKM--MLHPT 236
+ +L PT
Sbjct: 183 YDIFQLLPPT 192
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q ++ SAT P+D+ + +F+ + + + V ++Q ++ V K E K ++L L
Sbjct: 194 QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLY 253
Query: 434 EENDGKRILVFVETKRNADFIAAML 508
E + ++F T+R D++ L
Sbjct: 254 ETVTVTQAVIFCNTRRKVDWLTEQL 278
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.2 bits (204), Expect = 5e-18
Identities = 42/80 (52%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+HG Q R AL FKSG LVAT VAARGLDI VD+V+NYD+P Y+HR+G
Sbjct: 315 LHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVG 374
Query: 715 RTGRVGNRGKAVSF---YDL 765
RT R G GK+++ YDL
Sbjct: 375 RTARAGRAGKSIALVTQYDL 394
Score = 58.0 bits (134), Expect = 2e-09
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 3 GSV-LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEA 176
GS+ ++ V GG + Q +++ H+LV TPGRL D +E + S +++++++DEA
Sbjct: 139 GSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEA 198
Query: 177 DRMLDMGFMPSIEKMM 224
DR+LDM F P I+K++
Sbjct: 199 DRLLDMDFGPIIDKIL 214
Score = 40.7 bits (91), Expect = 3e-04
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +2
Query: 248 HERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQ 427
HER+TL+FSAT ++ L L+ + VAV + Q ++ K L
Sbjct: 219 HERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVY 278
Query: 428 LIEENDGKRILVFVETKRNADFIAAMLR 511
L+ E G I++F T + +A +LR
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLR 306
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 86.2 bits (204), Expect = 5e-18
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +1
Query: 517 QLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDE 696
+L + +H + +QRER +L F++ ILVAT VA+RGLDI +V +V+N+DLP+ D+
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 697 YVHRIGRTGRVGNRGKAVS 753
Y+HR+GRT R G G+++S
Sbjct: 342 YIHRVGRTARAGRSGESIS 360
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR----VSFGSVRFVVLDEAD 179
LK A+ GG + Q ++++ H++VATPGRL D + N ++F+V+DEAD
Sbjct: 104 LKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEAD 163
Query: 180 RMLDMGFMPSIE 215
R+L F ++
Sbjct: 164 RLLSPTFADDLD 175
Score = 32.7 bits (71), Expect = 0.067
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNN-----YLF-VAVGIVGGASTDVEQIFIEVTKYEKR 412
+RQTL+F+AT + I+ L + N +L+ V + ST ++Q +I V+ +
Sbjct: 186 DRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPST-LQQSYIFVSSQVRE 244
Query: 413 NSLKQL--IEENDGKRILVFVETKRNADFIAAMLR 511
L L I EN K ++FV R A+ I ++LR
Sbjct: 245 AYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILR 279
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 83.8 bits (198), Expect = 3e-17
Identities = 35/78 (44%), Positives = 55/78 (70%)
Frame = +1
Query: 520 LLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEY 699
L + IHG Q +R AL++F+ GK L+AT VA+RG+DIK +++V+NY+ P + + Y
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVY 588
Query: 700 VHRIGRTGRVGNRGKAVS 753
+HR+GRT R G G+A++
Sbjct: 589 LHRVGRTARAGRSGRAIT 606
Score = 45.6 bits (103), Expect = 9e-06
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRML 188
+ V + GG +++ Q + + I++ATPGR D + ++ + ++ +V+DEADRML
Sbjct: 359 IMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
Query: 189 DMGFMPSIEKMM 224
+ GF + +++
Sbjct: 419 EDGFADELNEII 430
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 79.4 bits (187), Expect = 6e-16
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IHG Q ER + + FK I VAT V RG+DI+ V+IV+NYD+P S D Y+HR+G
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVG 384
Query: 715 RTGRVGNRGKAVSF 756
R GR G +G A++F
Sbjct: 385 RAGRFGTKGLAITF 398
Score = 45.6 bits (103), Expect = 9e-06
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNI---ARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADR 182
++ AV YGG ++ + ++ HI+VATPGRL+ V + SV+ VLDE D+
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
Query: 183 MLD 191
+L+
Sbjct: 209 LLE 211
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST-DVEQIFIEVTKYEKRNSLKQ 427
++Q +MFSAT +I+ + +F+ N L + V + ++Q ++++ + K +
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKIND 288
Query: 428 LIEENDGKRILVFVETKRNADFIAAMLRNSN 520
L++ + ++++FV++ A+ + +LR N
Sbjct: 289 LLDSLEFNQVVIFVKSVSRANELDRLLRECN 319
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 79.0 bits (186), Expect = 8e-16
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKS----GKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYV 702
+HG Q+ R L F S G H IL+ T VAARGLD+ NVD+VV YD P S D+Y+
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSH-ILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYL 531
Query: 703 HRIGRTGRVGNRGKAVSF 756
HRIGRT R G+ G A+ F
Sbjct: 532 HRIGRTARAGHNGAAIMF 549
Score = 57.2 bits (132), Expect = 3e-09
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRMLDMGFMPS 209
GG + + I +G +IL+ TPGRL D +E + VR+VVLDE DR++DMGF +
Sbjct: 255 GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEET 314
Query: 210 IEKMM 224
+ K++
Sbjct: 315 LTKIL 319
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 76.2 bits (179), Expect = 6e-15
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +1
Query: 538 HGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGR 717
H +Q R NF++G LV + + RG+DI+ V++V+N+D PK+ + Y+HRIGR
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 718 TGRVGNRGKAVSF 756
+GR G+RG A+SF
Sbjct: 372 SGRFGHRGLAISF 384
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV V GGT +R + HI+V TPGR+ D + F V+DEAD++L
Sbjct: 141 VKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLS 200
Query: 192 MGFMPSIEKMM 224
F P IE+++
Sbjct: 201 PEFTPIIEQLL 211
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 71.3 bits (167), Expect = 2e-13
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+HG + Q R E F S +H +L T + ARGLD VD V+ D P+ +D Y+HR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 715 RTGRVGNRGKAV 750
RT R G A+
Sbjct: 375 RTARYNRSGNAL 386
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/66 (36%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGS--VRFVVLDEADRMLDMGFMP 206
GG + + + ++R +ILV TPGRL +++ V+F + ++ ++LDEADR+LDMGF
Sbjct: 147 GGNNYKEEKERLSR-MNILVCTPGRLLQHIDQ-AVNFDTSGLQMLILDEADRILDMGFRT 204
Query: 207 SIEKMM 224
+++ ++
Sbjct: 205 TLDAIV 210
Score = 34.7 bits (76), Expect = 0.017
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST--DVEQIFIEVTKYEKRNSLKQ 427
RQT++FSAT + ++ LA L N F++V +ST ++ Q ++ V EK + L
Sbjct: 217 RQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFG 276
Query: 428 LIEENDGKRILVFVETKRNADFIAAMLR 511
I + + +VF+ + + F+ R
Sbjct: 277 FIRTHLKFKTIVFLSSCKQVRFVYETFR 304
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.1 bits (159), Expect = 1e-12
Identities = 36/81 (44%), Positives = 47/81 (58%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
S I+G Q R + NF+ GK +LV T VA+RG+DI + V+NYD P +VHR
Sbjct: 374 SKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHR 433
Query: 709 IGRTGRVGNRGKAVSFYDLIR 771
+GRT R G G A Y L+R
Sbjct: 434 VGRTARAGRTGWA---YSLVR 451
Score = 49.6 bits (113), Expect = 5e-07
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGR-LHDFVERNRVSFGSVRFVVLDEAD 179
G+ L+ GG ++ Q ++ I+VATPGR LH VE ++ S+ +VV DEAD
Sbjct: 165 GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEM-KLELSSIEYVVFDEAD 223
Query: 180 RMLDMGFMPSIEKMMLH--PTMVET 248
R+ +MGF + + +LH PT +T
Sbjct: 224 RLFEMGFAAQLTE-ILHALPTSRQT 247
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 236 HGGDHERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRN 415
H RQTL+FSAT P + A L + + V + + S D++ F V E+
Sbjct: 239 HALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREA 298
Query: 416 SLKQLIEE 439
+L ++++
Sbjct: 299 ALLCILQD 306
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 66.5 bits (155), Expect = 4e-12
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 520 LLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEY 699
L TSS+ D ER++ + F +G +LV + + ARG+D+ N V+NYD P S+ Y
Sbjct: 466 LFTSSLSRD----ERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSY 521
Query: 700 VHRIGRTGRVGNRGKA 747
VHRIGRT R G G A
Sbjct: 522 VHRIGRTARAGREGFA 537
Score = 50.4 bits (115), Expect = 3e-07
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQ-----GDNIARGCHILVATPGRLHDFVERNRVSFG--SVRFV 161
G+ L+V G ++RH+ GD +LV+TPGRL D + RN SF +R++
Sbjct: 231 GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHI-RNDESFSLQHLRYM 289
Query: 162 VLDEADRMLDMGFMPSIEKMML---HPTMVE 245
V+DEADR+LD F ++ +M+ HP ++
Sbjct: 290 VIDEADRLLDQSFQDWVDTVMMEISHPKCLQ 320
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.1 bits (154), Expect = 6e-12
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+H Q++R ++L+ FK+ +LV T VAARG+DI +V V++Y +P + D YVHR G
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSG 478
Query: 715 RTGRVGNRGKAV 750
RT R G ++
Sbjct: 479 RTARANEDGVSI 490
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRV--SFGSVRFVVLDEADRM 185
++V GG AV+ Q + + H++VATPGRL + N + +F ++ +VLDEADR+
Sbjct: 221 IRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRL 280
Query: 186 LDMGFMPSIEKMM 224
L + K++
Sbjct: 281 LQKSHFEELSKLL 293
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFK-SGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
++HG ++Q R + FK S K +L T +A+RGLDI NVD V+ D P + HR
Sbjct: 287 ALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHR 346
Query: 709 IGRTGRVGNRGKAV 750
GR GR G G A+
Sbjct: 347 CGRAGRAGRAGVAI 360
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/47 (31%), Positives = 33/47 (70%)
Frame = +3
Query: 84 ILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMM 224
+++ TPGRL++ + + +S + ++LDEAD ++DMGF +++ ++
Sbjct: 135 VVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRTLQSII 179
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.3 bits (147), Expect = 4e-11
Identities = 32/73 (43%), Positives = 43/73 (58%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+HG + Q+ R F + + IL+ T VAARGLDI VD +V YD P +Y+HR+G
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG 425
Query: 715 RTGRVGNRGKAVS 753
RT R G +G S
Sbjct: 426 RTAR-GTKGTGKS 437
Score = 56.8 bits (131), Expect = 4e-09
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 VAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRMLDMGF 200
+ GG R + D + +G ++LVATPGRL D ++ + F ++R +V+DEADR+L++GF
Sbjct: 194 IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGF 253
Query: 201 MPSIEKMM 224
+ ++M
Sbjct: 254 EDEMRQIM 261
Score = 32.3 bits (70), Expect = 0.089
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLN-NYLFVAVGIVGGAST--DVEQIFIEVTKYEKRNSLK 424
RQTL+FSAT ++ LA L L+V V ST +EQ ++ V ++ L
Sbjct: 269 RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLF 328
Query: 425 QLIEENDGKRILVFVETKRNADFIAAML 508
++ N K+++VF+ + + ++A +L
Sbjct: 329 SFLKRNLKKKVIVFMSSCASVKYMAELL 356
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.9 bits (146), Expect = 5e-11
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+H +R ++F+ + IL AT V ARG+D N+ VV P + D+Y+HRIG
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 715 RTGRVGNRGKA 747
RTGR G G+A
Sbjct: 383 RTGRAGKTGEA 393
Score = 61.7 bits (143), Expect = 1e-10
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARG-CHILVATPGRLHDFVERNRVSFG-SVRFVVLDEA 176
G+ ++V+ A GG + + + I RG ++L+ATPGRL D ++ R+ S +LDEA
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEA 197
Query: 177 DRMLDMGFMPSIEKMMLHPTMVETTKGKL*CF 272
DR++DMGF SI + +H V TTK + CF
Sbjct: 198 DRLMDMGFAESI--LNIHEA-VTTTKTRKLCF 226
Score = 31.1 bits (67), Expect = 0.21
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +2
Query: 263 LMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQI--FIEVTKYEKRNS-----L 421
L FSAT P + ++ L + + E++ F+ TK +K S L
Sbjct: 224 LCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLL 283
Query: 422 KQLIEENDGKRILVFVETKRNADFIAAMLRN 514
+QL N RI+VF+ T DF+ +L N
Sbjct: 284 QQLTSSNPSSRIIVFLPTISMVDFVGGVLEN 314
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.9 bits (146), Expect = 5e-11
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +1
Query: 559 EREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLP------KSIDEYVHRIGRT 720
+R+ + +F+ G +LV T V ARG+D+ V++VVNYD+P Y+HRIGRT
Sbjct: 390 QRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 449
Query: 721 GRVGNRGKAVSF 756
GR G G +++F
Sbjct: 450 GRFGRVGVSINF 461
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADR 182
G +V A+G +G I I++ TPG + D ++R ++ ++ VLDEAD
Sbjct: 208 GKYTEVKTAFGIKDSVPKGAKI--DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 265
Query: 183 MLD 191
MLD
Sbjct: 266 MLD 268
Score = 29.5 bits (63), Expect = 0.63
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q ++FSATF E ++ A RF N + + + ++Q++++ E K N L +L
Sbjct: 288 QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 347
Query: 434 EENDGKRILVFVETKRNADFIA 499
+ ++F + K A+ IA
Sbjct: 348 GLLTIGQSIIFCKKKDTAEEIA 369
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 628 ARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSF 756
ARGLD +NV V+N+D+P + Y+HRIGRT R G G A+SF
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
Score = 33.1 bits (72), Expect = 0.051
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 84 ILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGF 200
I++ATP R V + ++F+V+DEAD ML G+
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGY 181
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 52.4 bits (120), Expect = 8e-08
Identities = 19/61 (31%), Positives = 42/61 (68%)
Frame = +1
Query: 556 REREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGN 735
R +++ L FK+GK+ +L+ATAVA G+D+ + ++V+ +++ +++ +YV GR + +
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
Query: 736 R 738
+
Sbjct: 470 K 470
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 52.0 bits (119), Expect = 1e-07
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQN-FKSGKHCILVATAVAARGLD 642
C ++T C ++ + L + + +++ + +QN ++SG + I+VAT G+D
Sbjct: 749 CLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVD 808
Query: 643 IKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
+V V+++ PKS++ Y GR GR G + FY
Sbjct: 809 KGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFY 847
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 487 RLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKS--GKHCILVATAVAARGLDIKNVDI 660
RLH S + +T GD ER+ F++ GK I++AT G++ V +
Sbjct: 1434 RLHQSDLFAHTHVTIYT-GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRL 1492
Query: 661 VVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYD 762
VV+Y LP S +YV GR GR G A FY+
Sbjct: 1493 VVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1526
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 487 RLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKS--GKHCILVATAVAARGLDIKNVDI 660
RLH S + +T GD ER+ F++ GK I++AT G++ V +
Sbjct: 1434 RLHQSDLFAHTHVTIYT-GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRL 1492
Query: 661 VVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYD 762
VV+Y LP S +YV GR GR G A FY+
Sbjct: 1493 VVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1526
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 49.6 bits (113), Expect = 5e-07
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 553 QREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGR 726
Q +++E + F++G LVAT++ GLDI + D+++ YD S + R+GRTGR
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 553 QREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGR 726
Q+ + E ++ F+ G+ L+AT++ GLDI VD+++ YD S + R+GRTGR
Sbjct: 478 QKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 34.7 bits (76), Expect = 0.017
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +1
Query: 556 REREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGN 735
+ER + +GK ++AT G+DI ++D V+ P S+ + GR GR
Sbjct: 597 QERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNK 656
Query: 736 RGKAV 750
AV
Sbjct: 657 SSLAV 661
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.017
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
++ G+ ERE +Q+F+ K +LV V G DI N+D ++ S + I
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMI 353
Query: 712 GRTGRVGNRGK 744
GR R+ + GK
Sbjct: 354 GRGLRL-HEGK 363
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 371 VEQIFIEVTKYEKRNSLKQLIEEND 445
VE++ TKYE NSLK+++EE D
Sbjct: 251 VEKLLKTATKYEALNSLKRIMEETD 275
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 317 LNNYLFVAVGIVGGASTDVE-QIFIEVTKYEKRNSLKQLIEENDGKRILVFVETK 478
LNN+L + I+ A D Q+F + T +K K +EEN + F + K
Sbjct: 134 LNNFLHSSAKILDRALCDQSNQLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEK 188
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -3
Query: 804 SILKDQPL---GLNPDQIIKRYSFSSVSYATSTPYSVHILINAFWEVIIHYNVYIFN 643
++L QPL G+ + Y+ + + TPY + W +I H+ + I N
Sbjct: 86 ALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFIIAIAN 142
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 489 SALRFVSTNTKILLPSFSSMSCFRLFR-FSYLVTSMKICSTSVLAPPTIP 343
++L++ S IL+P F + S +FR + S + S+ ++ P++P
Sbjct: 13 NSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLP 62
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 147 SVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETT 251
++R V++ RM+D P + K+ L P M +TT
Sbjct: 749 AIRKPVIEFRIRMVDSSNNPGLTKLFLKPDMFDTT 783
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 RFLNNYLFVAVGIVGGAS-TDVEQIFIEVTKYEKRNSLKQLIEENDGKRI 457
++L YL + VG S +D+E + V + ++ LI+E DGK I
Sbjct: 2 KYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDI 51
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 526 TSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYD 675
T+++HGD M A +N K A+++ L ++ +I VN D
Sbjct: 2070 TTNVHGDEMVVTTTSAYENEKFSSKTEWRNRAISSISLPLRTKNIYVNSD 2119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,612,314
Number of Sequences: 5004
Number of extensions: 78661
Number of successful extensions: 339
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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