Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00843
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      139   3e-35
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     27   0.16 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  139 bits (337), Expect = 3e-35
 Identities = 65/86 (75%), Positives = 75/86 (87%)
 Frame = +1

Query: 505 VAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK 684
           ++E    T+SIHGDR+QR+REEAL +FKSG+  ILVATAVAARGLDIKNV  V+NYDLPK
Sbjct: 471 LSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK 530

Query: 685 SIDEYVHRIGRTGRVGNRGKAVSFYD 762
            IDEYVHRIGRTGRVGNRG+A SF+D
Sbjct: 531 GIDEYVHRIGRTGRVGNRGRATSFFD 556



 Score =  123 bits (297), Expect = 2e-30
 Identities = 57/79 (72%), Positives = 66/79 (83%)
 Frame = +3

Query: 6   SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRM 185
           S+LK  VAYGGT+V HQ   ++ GCHILVATPGRL DFVE+ RV F SV+F+VLDEADRM
Sbjct: 300 SILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRM 359

Query: 186 LDMGFMPSIEKMMLHPTMV 242
           LDMGF+PSIEKM+ H TMV
Sbjct: 360 LDMGFLPSIEKMVDHETMV 378



 Score =  117 bits (281), Expect = 2e-28
 Identities = 59/94 (62%), Positives = 74/94 (78%), Gaps = 4/94 (4%)
 Frame = +2

Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 430
           ERQTLMFSATFP+++QHLA RFLNNYLF+AVGIVGGA +DVEQ F EV + +K++ LK++
Sbjct: 382 ERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEI 441

Query: 431 IE-ENDGKRI---LVFVETKRNADFIAAMLRNSN 520
           +E END   +   LVFVE K+ ADFIA  L  +N
Sbjct: 442 LERENDSGTLGGTLVFVEMKKKADFIAVFLSENN 475



 Score = 26.6 bits (56), Expect = 0.29
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 797 KILRQADQSVPDFLKG 844
           +IL+QA+QSVPD++ G
Sbjct: 569 RILKQANQSVPDWMMG 584


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 439 FLNELF*TVPFFIFSDFN--EDLFDVSASASDDTNRHK 332
           F N+ +  VP+F+F DFN   D   V    ++DT   +
Sbjct: 213 FHNDKYSNVPYFLFGDFNFRTDTAGVIKKLTEDTQERR 250


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 712  LFCAHTHQCFLGGHNSL 662
            L C +T+Q +L  HN +
Sbjct: 1465 LLCGNTYQLYLTSHNKI 1481


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 712  LFCAHTHQCFLGGHNSL 662
            L C +T+Q +L  HN +
Sbjct: 1461 LLCGNTYQLYLTSHNKI 1477


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 714 PYSVHILINAFWEVIIHYNVYIFNV*TTCSYS 619
           P++V++L+N  W +      +   +  TCS S
Sbjct: 241 PFAVYVLVNGSWSLPGFVCDFYIAMDVTCSTS 272


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 742 FLCFLRDQYALFCAHTHQCFL 680
           ++C+L   Y ++     QCF+
Sbjct: 657 YICYLGKAYLMYAIAGSQCFI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,919
Number of Sequences: 438
Number of extensions: 5413
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)