Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00843
(845 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 108 4e-24
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 107 9e-24
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 107 1e-23
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 107 1e-23
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 104 6e-23
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 102 3e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 5e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 5e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 5e-22
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 6e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 100 1e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 95 4e-20
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 93 2e-19
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 93 3e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 92 4e-19
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 92 5e-19
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 92 5e-19
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 91 8e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 91 8e-19
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 89 3e-18
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 89 5e-18
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 89 5e-18
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 88 6e-18
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 88 8e-18
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 87 2e-17
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 84 1e-16
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 84 1e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 84 1e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 84 1e-16
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 83 2e-16
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 82 4e-16
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 82 4e-16
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 82 4e-16
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 81 7e-16
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 81 7e-16
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 75 6e-14
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 75 6e-14
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 72 4e-13
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 72 4e-13
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 72 4e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 71 7e-13
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 71 7e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 71 1e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 71 1e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 69 4e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 69 5e-12
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 69 5e-12
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 68 7e-12
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 68 7e-12
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 68 9e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 66 2e-11
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 66 2e-11
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 65 6e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 1e-10
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 63 3e-10
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 63 3e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 60 2e-09
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 60 2e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 58 7e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 58 7e-09
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 58 7e-09
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 57 1e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 56 4e-08
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 56 4e-08
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 55 5e-08
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 55 5e-08
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 54 1e-07
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 51 8e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 50 2e-06
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 49 4e-06
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 48 1e-05
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 42 4e-04
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 42 7e-04
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 40 0.002
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 38 0.006
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 36 0.045
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 35 0.078
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 35 0.078
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 32 0.55
At5g23940.1 68418.m02811 transferase family protein similar to a... 31 0.73
At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to ... 31 1.3
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 31 1.3
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi... 30 2.2
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,... 30 2.2
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 30 2.2
At2g28600.1 68415.m03476 expressed protein 29 2.9
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 29 3.9
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 29 3.9
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 5.1
At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family... 29 5.1
At5g52290.1 68418.m06489 hypothetical protein 28 6.8
At3g22380.1 68416.m02825 expressed protein 28 6.8
At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger) fa... 28 9.0
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 9.0
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 108 bits (260), Expect = 4e-24
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
++IHGDR Q+ERE AL++FK+G+ ILVAT VAARGLDI +V VVN+DLP ID+YVHR
Sbjct: 433 TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 492
Query: 709 IGRTGRVGNRGKAVSFYD 762
IGRTGR GN G A +F++
Sbjct: 493 IGRTGRAGNSGLATAFFN 510
Score = 92.3 bits (219), Expect = 4e-19
Identities = 45/71 (63%), Positives = 52/71 (73%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV VAYGGT V Q + RG ILVATPGRL+D +ER RVS VRF+ LDEADRMLD
Sbjct: 253 VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLD 312
Query: 192 MGFMPSIEKMM 224
MGF P I K++
Sbjct: 313 MGFEPQIRKIV 323
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQT++FSATFP +IQ LA FL+NY+F+AVG VG ++ + Q V +KR+ L L+
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLL 393
Query: 434 EE-----NDGKR--ILVFVETKRNAD 490
N GK+ LVFVETK+ AD
Sbjct: 394 HAQRENGNQGKQALTLVFVETKKGAD 419
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 107 bits (257), Expect = 9e-24
Identities = 52/78 (66%), Positives = 62/78 (79%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+SIHGDR Q+ERE AL+ FKSG+ ILVAT VAARGLDI +V VVN+DLP ID+YVHR
Sbjct: 446 TSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 709 IGRTGRVGNRGKAVSFYD 762
IGRTGR G G A +F++
Sbjct: 506 IGRTGRAGKSGLATAFFN 523
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/71 (60%), Positives = 52/71 (73%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV VAYGGT + Q + RG ILVATPGRL+D +ER RVS +RF+ LDEADRMLD
Sbjct: 266 VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 325
Query: 192 MGFMPSIEKMM 224
MGF P I K++
Sbjct: 326 MGFEPQIRKIV 336
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQTL+FSATFP +IQ LA FL NY+F+AVG VG ++ + Q V +KR+ L L+
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLL 406
Query: 434 ---EEN--DGKR--ILVFVETKRNAD 490
EN GK+ LVFVETKR AD
Sbjct: 407 HAQRENGIQGKQALTLVFVETKRGAD 432
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 107 bits (256), Expect = 1e-23
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+SIHGDR Q+ERE AL++FK+G+ ILVAT VAARGLDI +V VVN+DLP ID+YVHR
Sbjct: 436 TSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 495
Query: 709 IGRTGRVGNRGKAVSFYD 762
IGRTGR G G A +F++
Sbjct: 496 IGRTGRAGKSGIATAFFN 513
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV VAYGGT + Q + RGC ILVATPGRL+D +ER RVS +RF+ LDEADRMLD
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
Query: 192 MGFMPSIEKMM 224
MGF P I K++
Sbjct: 318 MGFEPQIRKIV 328
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQT++FSATFP IQ LA F++NY+F+AVG VG ++ + Q V + +KR+ L L+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Query: 434 ----EENDGKRI-LVFVETKRNAD 490
E D + + LVFVETKR AD
Sbjct: 399 HAQRETQDKQSLTLVFVETKRGAD 422
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 107 bits (256), Expect = 1e-23
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+SIHGDR Q+ERE AL++FK+G+ ILVAT VAARGLDI +V VVN+DLP ID+YVHR
Sbjct: 436 TSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 495
Query: 709 IGRTGRVGNRGKAVSFYD 762
IGRTGR G G A +F++
Sbjct: 496 IGRTGRAGKSGIATAFFN 513
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/71 (61%), Positives = 53/71 (74%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV VAYGGT + Q + RGC ILVATPGRL+D +ER RVS +RF+ LDEADRMLD
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
Query: 192 MGFMPSIEKMM 224
MGF P I K++
Sbjct: 318 MGFEPQIRKIV 328
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQT++FSATFP IQ LA F++NY+F+AVG VG ++ + Q V + +KR+ L L+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Query: 434 ----EENDGKRI-LVFVETKRNAD 490
E D + + LVFVETKR AD
Sbjct: 399 HAQRETQDKQSLTLVFVETKRGAD 422
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 104 bits (250), Expect = 6e-23
Identities = 44/75 (58%), Positives = 58/75 (77%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IHGD+ Q ER+ L F+SGK C+L+AT VAARGLDIK++ +V+NYD P +++YVHRIG
Sbjct: 709 IHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIG 768
Query: 715 RTGRVGNRGKAVSFY 759
RTGR G G A +F+
Sbjct: 769 RTGRAGATGVAFTFF 783
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q + RG I+VATPGRL+D +E + F V +VLDEADRMLDMGF P
Sbjct: 542 YGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQ 601
Query: 210 IEKMM 224
I K++
Sbjct: 602 IRKIV 606
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG--GASTDVEQIFIEVTKYEKRNSLKQ 427
RQTLM++AT+P++++ +A L N + V +G V A+ + Q V + EK L+Q
Sbjct: 613 RQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQ 672
Query: 428 LIEEND-GKRILVFVETKRNADFIA 499
++ + G ++++F TKR D +A
Sbjct: 673 ILRSQERGSKVIIFCSTKRLCDHLA 697
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 102 bits (244), Expect = 3e-22
Identities = 43/77 (55%), Positives = 60/77 (77%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
++IHGD+ Q ER++ L F+SG+ +LVAT VAARGLD+K++ +VVNYD P +++YVHR
Sbjct: 501 AAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 560
Query: 709 IGRTGRVGNRGKAVSFY 759
IGRTGR G G A +F+
Sbjct: 561 IGRTGRAGATGLAYTFF 577
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/82 (50%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRM 185
S + A YGG Q I RG I+VATPGRL+D +E R+S V ++VLDEADRM
Sbjct: 328 SKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRM 387
Query: 186 LDMGFMPSIEKMMLH-PTMVET 248
LDMGF P I K++ PT +T
Sbjct: 388 LDMGFEPQIRKIVNEVPTKRQT 409
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG--ASTDVEQIFIEVTKYEKRNSLK 424
+RQTLM++AT+P++++ +A L N V +G V A+ + Q + EK + L+
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465
Query: 425 QLIEEND-GKRILVFVETKRNADFIAAML 508
Q++ + G +I++F TKR D +A L
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNL 494
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 5e-22
Identities = 47/98 (47%), Positives = 67/98 (68%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C K C + ++ +Q ++IHGD+ Q ER+ L F+SG+ +LVAT VAARGLD+
Sbjct: 410 CSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV 468
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
K++ VVNYD P +++YVHRIGRTGR G G+A +F+
Sbjct: 469 KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q ++ RG I+VATPGRL+D +E R+S + ++VLDEADRMLDMGF P
Sbjct: 265 YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQ 324
Query: 210 IEKMMLH-PTMVET 248
I K++ PT +T
Sbjct: 325 IRKIVKEIPTKRQT 338
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG--ASTDVEQIFIEVTKYEKRNSLK 424
+RQTLM++AT+P+ ++ +A L N V +G V A+ + Q V EK+ L+
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394
Query: 425 QLIEEND-GKRILVFVETKRNAD 490
Q++ + G ++++F TKR D
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCD 417
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 5e-22
Identities = 47/98 (47%), Positives = 67/98 (68%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C K C + ++ +Q ++IHGD+ Q ER+ L F+SG+ +LVAT VAARGLD+
Sbjct: 410 CSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV 468
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
K++ VVNYD P +++YVHRIGRTGR G G+A +F+
Sbjct: 469 KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q ++ RG I+VATPGRL+D +E R+S + ++VLDEADRMLDMGF P
Sbjct: 265 YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQ 324
Query: 210 IEKMMLH-PTMVET 248
I K++ PT +T
Sbjct: 325 IRKIVKEIPTKRQT 338
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG--ASTDVEQIFIEVTKYEKRNSLK 424
+RQTLM++AT+P+ ++ +A L N V +G V A+ + Q V EK+ L+
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394
Query: 425 QLIEEND-GKRILVFVETKRNAD 490
Q++ + G ++++F TKR D
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCD 417
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (243), Expect = 5e-22
Identities = 47/98 (47%), Positives = 67/98 (68%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C K C + ++ +Q ++IHGD+ Q ER+ L F+SG+ +LVAT VAARGLD+
Sbjct: 410 CSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV 468
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
K++ VVNYD P +++YVHRIGRTGR G G+A +F+
Sbjct: 469 KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q ++ RG I+VATPGRL+D +E R+S + ++VLDEADRMLDMGF P
Sbjct: 265 YGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQ 324
Query: 210 IEKMMLH-PTMVET 248
I K++ PT +T
Sbjct: 325 IRKIVKEIPTKRQT 338
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG--ASTDVEQIFIEVTKYEKRNSLK 424
+RQTLM++AT+P+ ++ +A L N V +G V A+ + Q V EK+ L+
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394
Query: 425 QLIEEND-GKRILVFVETKRNAD 490
Q++ + G ++++F TKR D
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCD 417
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (242), Expect = 6e-22
Identities = 45/76 (59%), Positives = 58/76 (76%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
SIHGD+ Q ER+ L F+SGK I+ AT VAARGLD+K+V V+NYD P S+++YVHRI
Sbjct: 373 SIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI 432
Query: 712 GRTGRVGNRGKAVSFY 759
GRTGR G +G A +F+
Sbjct: 433 GRTGRAGAKGTAYTFF 448
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +3
Query: 6 SVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRM 185
S +K YGG Q ++ +G I++ATPGRL D +E N + V ++VLDEADRM
Sbjct: 199 SKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRM 258
Query: 186 LDMGFMPSIEKMMLH 230
LDMGF P I K++ H
Sbjct: 259 LDMGFDPQIRKIVSH 273
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTKYEKRNSLKQ 427
+RQTL +SAT+P++++ L+ +FL N V +G A+ + QI +++ +K N L +
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336
Query: 428 LIEE-NDGKRILVFVETKRNADFIAAMLR 511
L+E+ DG RILVF++TK+ D I LR
Sbjct: 337 LLEDIMDGSRILVFLDTKKGCDQITRQLR 365
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 100 bits (239), Expect = 1e-21
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
+IHGD+ Q ER+ L FKSG+ I+ AT VAARGLD+K++ VVNYD P ++++Y+HRI
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI 498
Query: 712 GRTGRVGNRGKAVSFY 759
GRTGR G +G A +F+
Sbjct: 499 GRTGRAGAKGMAFTFF 514
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q ++ RG I++ATPGRL D +E + V ++VLDEADRMLDMGF P
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQ 332
Query: 210 IEKMM 224
I K++
Sbjct: 333 IRKIV 337
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTKYEKRNSLKQ 427
+RQTL++SAT+P +++ LA +FL + +G A+ + Q+ V EK N L
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402
Query: 428 LIEE-NDGKRILVFVETKRNADFIAAMLR 511
L+++ DG +IL+FVETKR D + LR
Sbjct: 403 LLKQLMDGSKILIFVETKRGCDQVTRQLR 431
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 95.5 bits (227), Expect = 4e-20
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+++HGD+ Q R E LQ FKSG H +L+AT VAARGLDIK++ VVNYD+ K +D +VHR
Sbjct: 501 AALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHR 560
Query: 709 IGRTGRVGNR 738
IGRTGR G+R
Sbjct: 561 IGRTGRAGDR 570
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
L+V+ YGG + Q + GC I+VATPGRL D ++ ++ ++VLDEADRM D
Sbjct: 330 LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD 389
Query: 192 MGFMPSIEKMM 224
+GF P + ++
Sbjct: 390 LGFEPQVRSIV 400
Score = 48.4 bits (110), Expect = 6e-06
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKR-----N 415
+RQTL+FSAT P ++ LA L++ + V VG VG A+ D+ Q+ + ++
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLE 465
Query: 416 SLKQLIEENDGKRILVFVETKRNADFIAAML 508
L +I+E D +LVF K D I A L
Sbjct: 466 KLPGMIDEGD---VLVFASKKATVDEIEAQL 493
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/87 (45%), Positives = 57/87 (65%)
Frame = +1
Query: 499 SHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDL 678
S+ + ++HGD Q +RE L F+ G ILVAT VAARGLD+ NVD++++Y+L
Sbjct: 366 SYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYEL 425
Query: 679 PKSIDEYVHRIGRTGRVGNRGKAVSFY 759
P + + +VHR GRTGR G +G A+ Y
Sbjct: 426 PNNTETFVHRTGRTGRAGKKGSAILIY 452
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGGT + Q + G + V TPGR+ D ++R ++ V+FVVLDEAD+ML +GF
Sbjct: 211 YGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAED 270
Query: 210 IE 215
+E
Sbjct: 271 VE 272
Score = 48.0 bits (109), Expect = 8e-06
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGA----STDVEQIFIEVTKYEKRNS 418
+RQ++MFSAT P I+ L ++LNN L V +VG + + + I Y + +
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPL--TVDLVGDSDQKLADGITTYSIIADSYGRASI 338
Query: 419 LKQLIEEN-DGKRILVFVETKRNADFIA-AMLRNSNCSHL 532
+ L+ E+ G + +VF +TKR+AD ++ A+ R+ C L
Sbjct: 339 IGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEAL 378
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 92.7 bits (220), Expect = 3e-19
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1
Query: 520 LLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEY 699
+ T ++HGD Q +RE L F+ GK +LVAT VA+RGLDI NVD+V++Y+LP + +
Sbjct: 375 IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
Query: 700 VHRIGRTGRVGNRGKAV 750
VHR GRTGR G G A+
Sbjct: 435 VHRSGRTGRAGKEGSAI 451
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
L YGG + Q + RG ++V TPGR+ D +E + G V ++VLDEAD+ML
Sbjct: 207 LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA 266
Query: 192 MGFMPSIEKMM 224
+GF ++E ++
Sbjct: 267 VGFEEAVESIL 277
Score = 47.6 bits (108), Expect = 1e-05
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG----ASTDVEQIFIEVTKYEKRNS 418
+RQ+++FSAT P ++ LA ++L+N L + +VG + ++ I T KR
Sbjct: 283 KRQSMLFSATMPTWVKKLARKYLDNPL--NIDLVGDQDEKLAEGIKLYAIATTSTSKRTI 340
Query: 419 LKQLIE-ENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRIL 586
L LI G + +VF +TKR+AD ++ L NS + A+ ++S +R R L
Sbjct: 341 LSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS----IATEALHGDISQHQRERTL 393
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/76 (55%), Positives = 56/76 (73%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
SIHG++ Q ER +L FK G +LVAT VAARGLDI +V++V+NY P + ++YVHRI
Sbjct: 395 SIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRI 454
Query: 712 GRTGRVGNRGKAVSFY 759
GRTGR G +G A +F+
Sbjct: 455 GRTGRAGKKGVAHTFF 470
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
LK YGG++ Q I G I++ TPGRL D +E N + V FVVLDEADRMLD
Sbjct: 220 LKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLD 279
Query: 192 MGF 200
MGF
Sbjct: 280 MGF 282
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLN-NYLFVAVGIVG-GASTDVEQIFIEVTKYEKRN---- 415
RQ +MFSAT+P D+ LA F++ N + V +G V A+ DV QI IEV R+
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQI-IEVLDERARDQRLI 355
Query: 416 SLKQLIEENDGKRILVFVETKRNADFIAAMLR 511
+L + ++ R+LVF K A+ + L+
Sbjct: 356 ALLEKYHKSQKNRVLVFALYKVEAERLERFLQ 387
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 91.9 bits (218), Expect = 5e-19
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
++HGD Q +RE L F+ G ILVAT VAARGLD+ NVD+V++Y+LP + + +VHR
Sbjct: 389 ALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRT 448
Query: 712 GRTGRVGNRGKAV 750
GRTGR G +G A+
Sbjct: 449 GRTGRAGKKGSAI 461
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGGT + Q + G + V TPGR+ D ++R ++ V+FVVLDEAD+ML +GF
Sbjct: 223 YGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAED 282
Query: 210 IE 215
+E
Sbjct: 283 VE 284
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGA----STDVEQIFIEVTKYEKRNS 418
+RQ++MFSAT P I+ L ++LNN L + +VG + + + I Y + +
Sbjct: 293 KRQSMMFSATMPSWIRSLTKKYLNNPL--TIDLVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 419 LKQLIEEN-DGKRILVFVETKRNADFIAAMLRNS 517
+ L++E+ G + +VF +TKR+AD +A L S
Sbjct: 351 IGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKS 384
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 91.9 bits (218), Expect = 5e-19
Identities = 40/97 (41%), Positives = 60/97 (61%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C K S + SS+HGD Q+ER+ + F+SG +L+ T V ARG+D+
Sbjct: 281 CNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDV 340
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSF 756
+ V +V+NYDLP + + Y+HRIGR+GR G +G A++F
Sbjct: 341 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 377
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GG +V + G H++ TPGR+ D ++R + +++ ++LDE+D ML GF I
Sbjct: 139 GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQI 198
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 91.1 bits (216), Expect = 8e-19
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
+IHG + Q +RE A+ +FK+GK +LVAT VA++GLD ++ V+NYD+P I+ YVHRI
Sbjct: 426 AIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 485
Query: 712 GRTGRVGNRGKAVSF 756
GRTGR G G A +F
Sbjct: 486 GRTGRCGKTGIATTF 500
Score = 68.1 bits (159), Expect = 7e-12
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
L+ + GG +R Q + + RG HI+VATPGRL D + + ++S + R++ LDEADR++D
Sbjct: 257 LRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD 316
Query: 192 MGFMPSIEKMMLH 230
+GF I ++ H
Sbjct: 317 LGFEDDIREVFDH 329
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 430
+RQTL+FSAT P IQ A L + V VG G A+ DV Q EV ++ + L
Sbjct: 333 QRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQ---EVEYVKQEAKIVYL 389
Query: 431 IE--ENDGKRILVFVETKRNADFI 496
+E + +L+F E K + D I
Sbjct: 390 LECLQKTSPPVLIFCENKADVDDI 413
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 91.1 bits (216), Expect = 8e-19
Identities = 38/75 (50%), Positives = 57/75 (76%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
S+HG + Q +RE + +FK+ +L+AT+VAARGLD+K +++VVN+D P ++YVHR+
Sbjct: 805 SLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV 864
Query: 712 GRTGRVGNRGKAVSF 756
GRTGR G +G AV+F
Sbjct: 865 GRTGRAGRKGCAVTF 879
Score = 58.4 bits (135), Expect = 6e-09
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVR---FVVLDEADR 182
++ YGG+ V Q + RG I+V TPGR+ D + + ++R F+V+DEADR
Sbjct: 631 IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 690
Query: 183 MLDMGFMPSIEKMM 224
M DMGF P I +++
Sbjct: 691 MFDMGFEPQITRII 704
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKR--NSLK 424
ERQT++FSATFP ++ LA + LN + + VG + D+ Q+ +EV R L+
Sbjct: 710 ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 768
Query: 425 QLIEENDGKRILVFVETKRNAD 490
L E ++ +ILVFV+++ D
Sbjct: 769 LLGEWSEKGKILVFVQSQEKCD 790
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 89.4 bits (212), Expect = 3e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH D ERE A+ F++G+ +L+AT V ARG+D K ++ V+NYD P S Y+HRIG
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIG 469
Query: 715 RTGRVGNRGKAVSFY 759
R+GR G G+A++FY
Sbjct: 470 RSGRAGRSGEAITFY 484
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 266 MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLIEEN 442
+FSAT P+ ++ LA +++ + V +G AS V+Q + E K +L+Q E+
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 443 DGKRILVFVETKRNADFIAAMLRNSN 520
+L+FV++K A + L+ N
Sbjct: 379 LNPPVLIFVQSKERAKELYDELKCEN 404
Score = 39.1 bits (87), Expect = 0.004
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 78 CHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIE 215
C +L++TP RL ++ ++ V ++VLDE+D++ + + I+
Sbjct: 259 CDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQID 304
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 88.6 bits (210), Expect = 5e-18
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+++HG + Q +RE +L+ F++ ++ +LVAT V RG+DI +V V+NYD+PK I+ Y HR
Sbjct: 604 TTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHR 663
Query: 709 IGRTGRVGNRGKAVSFYDL 765
IGRTGR G G A SF L
Sbjct: 664 IGRTGRAGKSGVATSFLTL 682
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +3
Query: 15 KVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDM 194
+V GG ++ QG I +GC I++ATPGRL D +ER +VVLDEADRM+DM
Sbjct: 419 RVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM 478
Query: 195 GFMPSI 212
GF P +
Sbjct: 479 GFEPQV 484
Score = 61.7 bits (143), Expect = 6e-10
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
R T MFSAT P ++ LA ++L N + V +G G + + Q I + + EK L++L+
Sbjct: 512 RTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLL 571
Query: 434 EENDGKRILVFVETKRNADFIAAML 508
+E K +VFV TK+N D IA L
Sbjct: 572 DELGEKTAIVFVNTKKNCDSIAKNL 596
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 88.6 bits (210), Expect = 5e-18
Identities = 36/78 (46%), Positives = 57/78 (73%)
Frame = +1
Query: 523 LTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYV 702
+ SS+HGD+ Q+ER++ + F+S K +L+A+ V ARG+D++ V V+NYD+P + + Y+
Sbjct: 287 IVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYI 346
Query: 703 HRIGRTGRVGNRGKAVSF 756
HRIGR GR G G A++F
Sbjct: 347 HRIGRAGRFGREGVAINF 364
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GG ++ + RG H + TPGR++D ++R + +V+ +VLDE+D ML G I
Sbjct: 126 GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQI 185
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 88.2 bits (209), Expect = 6e-18
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
++HG+ Q +RE L F++GK LVAT VAARGLDI +V +++ + P+ ++ Y+HR
Sbjct: 375 ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRS 434
Query: 712 GRTGRVGNRGKAVSFYD 762
GRTGR GN G AV+ YD
Sbjct: 435 GRTGRAGNTGVAVTLYD 451
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG + Q + RG I+V TPGR+ D +ER + F ++F VLDEAD ML MGF+
Sbjct: 209 YGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVED 268
Query: 210 IEKMM 224
+E ++
Sbjct: 269 VELIL 273
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGG----ASTDVEQIFIEVTKYEKRNSLK 424
QTL+FSAT P +++++ RFL + +VG AS V I I K +
Sbjct: 283 QTLLFSATLPSWVKNISNRFLKRDQ-KTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIP 341
Query: 425 QLIE-ENDGKRILVFVETKRNADFIAAMLRNSNCSH 529
+I + G + ++F ETK ++ +L S H
Sbjct: 342 DIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALH 377
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 87.8 bits (208), Expect = 8e-18
Identities = 39/75 (52%), Positives = 54/75 (72%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
+IHG + Q +R+ A+ FK+GK +LVAT VA++GLD ++ V+NYD+P I+ YVHRI
Sbjct: 377 AIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRI 436
Query: 712 GRTGRVGNRGKAVSF 756
GRTGR G G A +F
Sbjct: 437 GRTGRCGKTGIATTF 451
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
L+ + GG +R Q D + +G HI+VATPGRL D + + ++S + R + LDEADR++D
Sbjct: 208 LRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD 267
Query: 192 MGFMPSIEKMMLH 230
+GF I + H
Sbjct: 268 LGFEDDIRHVFDH 280
Score = 42.7 bits (96), Expect = 3e-04
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +2
Query: 236 HGGDH---ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE 406
H DH +RQTL+FSAT P IQ A L + V VG G A+ DV Q EV +
Sbjct: 276 HVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQ---EVEYVK 332
Query: 407 KRNSLKQLIE--ENDGKRILVFVETKRNADFI 496
+ + L+E + +L+F E K + D I
Sbjct: 333 QEAKIVYLLECLQKTTPPVLIFCENKADVDDI 364
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 86.6 bits (205), Expect = 2e-17
Identities = 44/90 (48%), Positives = 58/90 (64%)
Frame = +1
Query: 484 CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIV 663
C+ S + E ++ ++H Q R AL FKSGK IL+AT VA+RGLDI VD+V
Sbjct: 315 CQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLV 374
Query: 664 VNYDLPKSIDEYVHRIGRTGRVGNRGKAVS 753
+NYD+P+ +YVHR+GRT R G G AVS
Sbjct: 375 INYDIPRDPRDYVHRVGRTARAGRGGLAVS 404
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR---VSFGSVRFVVLDEADR 182
L+ +V GG + Q ++ HI++ TPGR+ +E N F +F+VLDEADR
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADR 214
Query: 183 MLDMGFMPSI 212
+LD+GF +
Sbjct: 215 VLDVGFQDEL 224
Score = 32.3 bits (70), Expect = 0.42
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNN-YLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 430
RQTL+FSAT ++Q L N Y + A + T +Q FI K K L +
Sbjct: 235 RQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQ-FIFEDKDAKELYLVHI 293
Query: 431 IEENDGKRI---LVFVETKRNADFIAAML 508
+ + + K I ++FV T R ++ ML
Sbjct: 294 LSQMEDKGIRSAMIFVSTCRTCQRLSLML 322
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH Q ER ++FK G ILVAT + RG+DI+ V+IV+NYD+P S D Y+HR+G
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
Query: 715 RTGRVGNRGKAVSF 756
R GR G +G A++F
Sbjct: 378 RAGRFGTKGLAITF 391
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 15 KVAVAYGGTAVRHQGDNIARGC-HILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
KV+V YGG ++ D + C HI+V TPGR+ +S +VR +LDE D+ML+
Sbjct: 145 KVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 HERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST-DVEQIFIEVTKYEKRNSLK 424
H++Q +MFSAT ++I+ + +F+ + + + V + + Q +I++++ EK L
Sbjct: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLN 280
Query: 425 QLIEENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRILRVGN 598
L++ D ++++FV++ A + +L N + + RY+ + G+
Sbjct: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH Q ER ++FK G ILVAT + RG+DI+ V+IV+NYD+P S D Y+HR+G
Sbjct: 235 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 294
Query: 715 RTGRVGNRGKAVSF 756
R GR G +G A++F
Sbjct: 295 RAGRFGTKGLAITF 308
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 15 KVAVAYGGTAVRHQGDNIARGC-HILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
KV+V YGG ++ D + C HI+V TPGR+ +S +VR +LDE D+ML+
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 121
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 HERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST-DVEQIFIEVTKYEKRNSLK 424
H++Q +MFSAT ++I+ + +F+ + + + V + + Q +I++++ EK L
Sbjct: 138 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLN 197
Query: 425 QLIEENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRILRVGN 598
L++ D ++++FV++ A + +L N + + RY+ + G+
Sbjct: 198 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 255
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH Q ER ++FK G ILVAT + RG+DI+ V+IV+NYD+P S D Y+HR+G
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
Query: 715 RTGRVGNRGKAVSF 756
R GR G +G A++F
Sbjct: 378 RAGRFGTKGLAITF 391
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 15 KVAVAYGGTAVRHQGDNIARGC-HILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
KV+V YGG ++ D + C HI+V TPGR+ +S +VR +LDE D+ML+
Sbjct: 145 KVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 HERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGAST-DVEQIFIEVTKYEKRNSLK 424
H++Q +MFSAT ++I+ + +F+ + + + V + + Q +I++++ EK L
Sbjct: 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLN 280
Query: 425 QLIEENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRILRVGN 598
L++ D ++++FV++ A + +L N + + RY+ + G+
Sbjct: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +1
Query: 556 REREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGN 735
R +E+++ +FKS +L+AT+VAARGLD+K +++VVN+D P ++YVHR+GRTGR G
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 736 RGKAVSF 756
+G AV+F
Sbjct: 711 KGCAVTF 717
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVR---FVVLDEADRMLDMGF 200
YGG+ V Q + RG I+V TPGR+ D + + ++R ++V+DEADRM DMGF
Sbjct: 504 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGF 563
Query: 201 MPSIEKMM 224
P I +++
Sbjct: 564 EPQITRIV 571
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNS--LK 424
+RQT++FSATFP ++ LA + LN + + VG + D+ Q+ +E+ +R S L+
Sbjct: 577 DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEIRPESERFSRLLE 635
Query: 425 QLIEENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIA 550
L E + ++LVFV ++ + + ++ C+ L T++A
Sbjct: 636 LLGEWYEKGKVLVFVRSQEKS---ISDFKSDVCNLLIATSVA 674
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 83.0 bits (196), Expect = 2e-16
Identities = 34/79 (43%), Positives = 54/79 (68%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
S+ HGD Q R+ ++ F+SG +L+ T + ARG+D++ V +V+N+DLP + Y+HR
Sbjct: 306 SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHR 365
Query: 709 IGRTGRVGNRGKAVSFYDL 765
IGR+GR G +G A++F L
Sbjct: 366 IGRSGRFGRKGVAINFVTL 384
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV GGT+VR + G H++V TPGR+ D + R + ++ VLDEAD ML
Sbjct: 136 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLS 195
Query: 192 MGFMPSI 212
GF I
Sbjct: 196 RGFKDQI 202
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q +FSAT P + + +F++ + + V ++Q ++ V K + K +L L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY 273
Query: 434 EENDGKRILVFVETKRNADFIAAMLRN 514
E + ++FV T+R D++ +R+
Sbjct: 274 ETLAITQSVIFVNTRRKVDWLTDKMRS 300
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 82.2 bits (194), Expect = 4e-16
Identities = 33/76 (43%), Positives = 53/76 (69%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
S+ HGD Q R+ ++ F+SG +L+ T + ARG+D++ V +V+N+DLP + Y+HR
Sbjct: 306 SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHR 365
Query: 709 IGRTGRVGNRGKAVSF 756
IGR+GR G +G A++F
Sbjct: 366 IGRSGRFGRKGVAINF 381
Score = 58.8 bits (136), Expect = 4e-09
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+KV GGT+VR + G H++V TPGR+ D ++R + +++ VLDEAD ML
Sbjct: 136 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS 195
Query: 192 MGFMPSI 212
GF I
Sbjct: 196 RGFKDQI 202
Score = 34.7 bits (76), Expect = 0.078
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q +FSAT P + + +F++ + + V ++Q ++ V K E K +L L
Sbjct: 214 QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 273
Query: 434 EENDGKRILVFVETKRNADFIAAMLRN 514
E + ++FV T+R D++ +R+
Sbjct: 274 ETLAITQSVIFVNTRRKVDWLTDKMRS 300
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 82.2 bits (194), Expect = 4e-16
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 526 TSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVH 705
T +HG Q +R A FK+ K +L++T VAARGLD V ++ YD P EYVH
Sbjct: 376 TFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVH 435
Query: 706 RIGRTGRVGNRGKAVSFYDLIRI 774
R+GRT R+G +G+A+ F I I
Sbjct: 436 RVGRTARIGEKGEALLFLQPIEI 458
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSF--GSVRFVVLDEADRMLDMGFMP 206
GG + + +G IL+ATPGRL D + +N SF ++R+V+ DEAD +L++G+
Sbjct: 141 GGEKKAKEKARLRKGISILIATPGRLLDHL-KNTASFVHKNLRWVIFDEADSILELGYGK 199
Query: 207 SIEKMM 224
IE+++
Sbjct: 200 EIEQII 205
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 82.2 bits (194), Expect = 4e-16
Identities = 33/76 (43%), Positives = 53/76 (69%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
S+ HGD Q R+ ++ F+SG +L+ T + ARG+D++ V +V+N+DLP + Y+HR
Sbjct: 308 SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHR 367
Query: 709 IGRTGRVGNRGKAVSF 756
IGR+GR G +G A++F
Sbjct: 368 IGRSGRFGRKGVAINF 383
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
+K GGT+VR + G H++V TPGR+ D + R + +++ VLDEAD ML
Sbjct: 138 VKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLS 197
Query: 192 MGFMPSI-EKMMLHPTMVE 245
GF I + L P+ V+
Sbjct: 198 RGFKDQIYDIFQLLPSKVQ 216
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLI 433
Q +FSAT P + + +F+N + + V ++Q ++ V K E K +L L
Sbjct: 216 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 275
Query: 434 EENDGKRILVFVETKRNADFIAAMLRN 514
E + ++FV T+R D++ +R+
Sbjct: 276 ETLAITQSVIFVNTRRKVDWLTDKMRS 302
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 81.4 bits (192), Expect = 7e-16
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
I G Q +R AL FK+G+ ILV T VA+RGLDI +VD+V+NYD+P + +Y+HR+G
Sbjct: 290 ISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVG 349
Query: 715 RTGRVGNRGKAVS 753
RT R G G +S
Sbjct: 350 RTARAGRSGVGIS 362
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRML 188
L+ AV GG Q + + H++VATPGRL D + + S S++++VLDEADR+L
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLL 177
Query: 189 DMGFMPSIEKMM 224
+ F S+ +++
Sbjct: 178 NEDFEKSLNQIL 189
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 81.4 bits (192), Expect = 7e-16
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = +1
Query: 520 LLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEY 699
L + +HG+ Q +R ++L+ F+ + L+AT VAARGLDI V V+NY P+ ID Y
Sbjct: 437 LKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSY 496
Query: 700 VHRIGRTGRVGNRGKAVSF 756
VHR+GRT R G G AV+F
Sbjct: 497 VHRVGRTARAGREGYAVTF 515
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERN-RVSFGSVRFVVLDEADRML 188
+K + GG +VR Q + I+VATPGR+ D + + V + ++LDEADR+L
Sbjct: 267 IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 326
Query: 189 DMGFMPSIEKMM 224
GF I +++
Sbjct: 327 QTGFATEITELV 338
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNS---LK 424
RQT++FSAT E+++ L LN L ++ + + + + + + N L
Sbjct: 345 RQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLL 404
Query: 425 QLIEENDGKRILVFVETKRNA 487
L ++++F TK+ A
Sbjct: 405 SLCTRTFKSKVIIFSGTKQAA 425
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 74.9 bits (176), Expect = 6e-14
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IHGD Q R++AL +F L+ T VAARGLDI +D VV YD P+ + + HR G
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAG 367
Query: 715 RTGRVGNRGKAVSF 756
RT R+G +G+A+ F
Sbjct: 368 RTARLGRQGRAIVF 381
Score = 54.4 bits (125), Expect = 9e-08
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 GCHILVATPGRLHDFVERNRV-SFGSVRFVVLDEADRMLDMGFMPSI 212
GC++L+ TPGRL D +ER + F ++ ++LDEADR+L+MGF +
Sbjct: 142 GCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQV 188
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 74.9 bits (176), Expect = 6e-14
Identities = 34/75 (45%), Positives = 48/75 (64%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
S HG Q+ R+ AL +F +L+ T VAARGLDI +D VV YD P+ D ++HR+
Sbjct: 298 STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRV 357
Query: 712 GRTGRVGNRGKAVSF 756
GRT R+ +G+A+ F
Sbjct: 358 GRTARMERQGRAIVF 372
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 GCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRMLDMGFMPSI 212
G ++L+ TPGRL D ++R + F ++ ++LDEADR+LDMGF +
Sbjct: 142 GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 188
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/75 (41%), Positives = 50/75 (66%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
SIHG++ +ER + + +F G+ +LV+T V RG+D+ V V+ +D+P +I EY+H I
Sbjct: 387 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVI 446
Query: 712 GRTGRVGNRGKAVSF 756
GR R+G +G A+ F
Sbjct: 447 GRASRMGEKGTAIVF 461
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADR 182
G K A+ GG + Q I +G +++ TPGR+ D + ++ + ++ VLDE D
Sbjct: 212 GLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDC 271
Query: 183 MLDMGFMPSI 212
ML GF +
Sbjct: 272 MLQRGFRDQV 281
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI- 433
Q L+FSAT +++ + G + V++G + V Q+ I V +K+ L ++
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 351
Query: 434 EENDGK-RILVFVETKRNADFIA 499
+N K +V+V ++ AD +A
Sbjct: 352 SQNHFKPPAVVYVSSRVGADLLA 374
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/75 (41%), Positives = 50/75 (66%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
SIHG++ +ER + + +F G+ +LV+T V RG+D+ V V+ +D+P +I EY+H I
Sbjct: 250 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVI 309
Query: 712 GRTGRVGNRGKAVSF 756
GR R+G +G A+ F
Sbjct: 310 GRASRMGEKGTAIVF 324
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADR 182
G K A+ GG + Q I +G +++ TPGR+ D + ++ + ++ VLDE D
Sbjct: 75 GLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDC 134
Query: 183 MLDMGFMPSI 212
ML GF +
Sbjct: 135 MLQRGFRDQV 144
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI- 433
Q L+FSAT +++ + G + V++G + V Q+ I V +K+ L ++
Sbjct: 155 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 214
Query: 434 EENDGK-RILVFVETKRNADFIA 499
+N K +V+V ++ AD +A
Sbjct: 215 SQNHFKPPAVVYVSSRVGADLLA 237
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +1
Query: 526 TSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVH 705
++ +HGD + R L+ FK+G+ +LV ++ARGLD+ D+VVN +LP Y H
Sbjct: 434 SAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAH 493
Query: 706 RIGRTGRVGNRGKAVS 753
R GRTGR+G +G V+
Sbjct: 494 RAGRTGRLGRKGTVVT 509
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 84 ILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 230
I+V TPGR+ + + ++ RF+VLDE D +L F I +++ H
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEH 294
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.3 bits (167), Expect = 7e-13
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 451 KNLGICRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKS--GKHCILVATAV 624
K + C R +++E Q+ T + HG+ +R E L+ FK G LV T +
Sbjct: 372 KVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDL 431
Query: 625 AARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVS 753
AARGLD+ +VD VV +D PK+ +Y+HR GRT R+G +GK S
Sbjct: 432 AARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTS 473
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +3
Query: 33 GGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSI 212
GG+ +R Q D++ ++V TPGR+ +E + +G + ++VLDEAD M D GF P I
Sbjct: 225 GGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
Query: 213 EKMM 224
K +
Sbjct: 285 RKFL 288
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 71.3 bits (167), Expect = 7e-13
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +1
Query: 487 RLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVV 666
+ H+ + + S IHG Q R + +F K IL+ T VAARGLDI +VD ++
Sbjct: 348 QFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWII 407
Query: 667 NYDLPKSIDEYVHRIGRTGR-VGNRGKAV 750
YD P EY+HR+GRT R G +GKA+
Sbjct: 408 QYDPPDKPTEYIHRVGRTARGEGAKGKAL 436
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRV-SFGSVRFVVLDEADRMLDM 194
V++ GG R + IA G ++++ATPGRL D ++ + + ++ +V+DEADR+L+
Sbjct: 192 VSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEE 251
Query: 195 GFMPSIEKMM 224
F + K++
Sbjct: 252 NFEEDMNKIL 261
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAV--GIVGGASTDVEQIFIEVTKYEKRNSLKQ 427
RQT +FSAT ++ LA L + + V V G + +EQ + V ++ L
Sbjct: 268 RQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLIS 327
Query: 428 LIEENDGKRILVFVETKRNADFIAAMLRNSN 520
+++N K+I+VF T ++ F +++ S+
Sbjct: 328 FLKKNLNKKIMVFFSTCKSVQFHTEIMKISD 358
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH +Q R +F++G LV T + RG+DI+ V++V+N+D PK+ + Y+HR+G
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVG 457
Query: 715 RTGRVGNRGKAVS 753
R+GR G+ G AV+
Sbjct: 458 RSGRFGHLGLAVN 470
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
++V V GGT+++ + + H+LV TPGR+ D ++ +V+DEAD++L
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLS 287
Query: 192 MGFMPSIEKMM 224
F PS+E ++
Sbjct: 288 QEFQPSVEHLI 298
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQ LMFSATFP ++ RFL N + + + + Q + V + +K + L L
Sbjct: 305 RQILMFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFYAFVEERQKIHCLNTLF 363
Query: 434 EENDGKRILVFVETKRNADFIA 499
+ + ++F + + +A
Sbjct: 364 SKLQINQSIIFCNSVNRVELLA 385
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH +Q R +F++G LV T + RG+DI+ V++V+N+D PK+ + Y+HR+G
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVG 457
Query: 715 RTGRVGNRGKAVS 753
R+GR G+ G AV+
Sbjct: 458 RSGRFGHLGLAVN 470
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
++V V GGT+++ + + H+LV TPGR+ D ++ +V+DEAD++L
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLS 287
Query: 192 MGFMPSIEKMM 224
F PS+E ++
Sbjct: 288 QEFQPSVEHLI 298
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQ LMFSATFP ++ RFL N + + + + Q + V + +K + L L
Sbjct: 305 RQILMFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFYAFVEERQKIHCLNTLF 363
Query: 434 EENDGKRILVFVETKRNADFIA 499
+ + ++F + + +A
Sbjct: 364 SKLQINQSIIFCNSVNRVELLA 385
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 68.9 bits (161), Expect = 4e-12
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH +Q R +F++G LV T + RG+DI+ V++V+N+D P++ + Y+HR+G
Sbjct: 421 IHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 480
Query: 715 RTGRVGNRGKAVS 753
R+GR G+ G AV+
Sbjct: 481 RSGRFGHLGLAVN 493
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
++V V GGT++R + + H+LV TPGR+ D ++ +V+DEAD++L
Sbjct: 251 IEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS 310
Query: 192 MGFMPSIEKMM 224
+ F PSIE+++
Sbjct: 311 VEFQPSIEELI 321
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQ LMFSATFP ++ R+L + + + V Q + V + +K + L L
Sbjct: 328 RQILMFSATFPVTVKSFKDRYLKKPYIINL-MDQLTLMGVTQYYAFVEERQKVHCLNTLF 386
Query: 434 EENDGKRILVFVETKRNADFIA 499
+ + ++F + + +A
Sbjct: 387 SKLQINQSIIFCNSVNRVELLA 408
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 68.5 bits (160), Expect = 5e-12
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH +Q R F++G LV T + RG+DI+ V++V+N+D P++ + Y+HR+G
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 450
Query: 715 RTGRVGNRGKAVS 753
R+GR G+ G AV+
Sbjct: 451 RSGRFGHLGLAVN 463
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
++V V GGT++R + + H+LV TPGR+ D ++ +V+DEAD++L
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLS 280
Query: 192 MGFMPSIEKMM 224
F PS+E+++
Sbjct: 281 AEFQPSLEELI 291
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 68.5 bits (160), Expect = 5e-12
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
IH +Q R F++G LV T + RG+DI+ V++V+N+D P++ + Y+HR+G
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 450
Query: 715 RTGRVGNRGKAVS 753
R+GR G+ G AV+
Sbjct: 451 RSGRFGHLGLAVN 463
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD 191
++V V GGT++R + + H+LV TPGR+ D ++ +V+DEAD++L
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLS 280
Query: 192 MGFMPSIEKMM 224
F PS+E+++
Sbjct: 281 AEFQPSLEELI 291
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +1
Query: 451 KNLGICRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAA 630
K + C +L + + E L IH + Q R F+ K ILV + V+A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 631 RGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAV 750
RG+D +V +V+ LPK ++Y+HR+GRTGR G G+ +
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGI 413
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARG-CHILVATPGRLHDFVERNRVSFGS----VRFVVLDEADR 182
V V GGT + + + C ILVATPGRL D +E N F + V+ +VLDEAD
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIE-NTPGFATRLKGVKVLVLDEADH 220
Query: 183 MLDMGFMPSIEKMM 224
+LDMGF IE+++
Sbjct: 221 LLDMGFRKDIERII 234
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHL 304
ERQT +FSAT PE+++ +
Sbjct: 240 ERQTFLFSATVPEEVRQI 257
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/95 (35%), Positives = 50/95 (52%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C RL + +++ L IH + Q R F+ K ILV + V+ARG+D
Sbjct: 647 CTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDY 706
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAV 750
+V +VV LP ++Y+HR+GRTGR G G+ V
Sbjct: 707 PDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGV 741
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARG-CHILVATPGRLHDFVERNRVSFGS----VRFVVLDEADR 182
V V GGT + + + C ILVATPGRL D +E N F + V+ +VLDEAD
Sbjct: 490 VQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIE-NTSGFATRLMGVKVLVLDEADH 548
Query: 183 MLDMGFMPSIEKMM 224
+LDMGF IE+++
Sbjct: 549 LLDMGFRRDIERII 562
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFL-NNYLFVAVGIVGGAST--DVEQIFIEVTKYEKRNS- 418
+RQT +FSAT PE+++ + L ++ F+ G T V Q+++ + ++ S
Sbjct: 568 QRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYM-IASLDRHFSL 626
Query: 419 ----LKQLIEENDGKRILVFVETKRNADFIAAML 508
LK+ I +N ++++F T +A +L
Sbjct: 627 LHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLL 660
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 67.7 bits (158), Expect = 9e-12
Identities = 34/95 (35%), Positives = 49/95 (51%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C RL + + + L IH + Q R F+ K ILV + V+ARG+D
Sbjct: 345 CTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDY 404
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAV 750
+V +VV LP ++Y+HR+GRTGR G G+ V
Sbjct: 405 PDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGV 439
Score = 54.8 bits (126), Expect = 7e-08
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARG-CHILVATPGRLHDFVERNRVSFGS----VRFVVLDEADR 182
V V GGT + + + + C ILVATPGRL D ++ N F + V+ +VLDEAD
Sbjct: 188 VQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHID-NTSGFATRLMGVKVLVLDEADH 246
Query: 183 MLDMGFMPSIEKMM 224
+LDMGF IE+++
Sbjct: 247 LLDMGFRREIERII 260
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFL-NNYLFVAVGIVGGAST--DVEQIFIEVTKYEKRNS- 418
+RQT +FSAT ++++ + L ++ FV G T V Q+++ + ++ S
Sbjct: 266 QRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYM-IASLDRHFSL 324
Query: 419 ----LKQLIEENDGKRILVFVETKRNADFIAAML 508
LK+ I +N G ++++F T +A +L
Sbjct: 325 LYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLL 358
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/65 (49%), Positives = 42/65 (64%)
Frame = +3
Query: 30 YGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPS 209
YGG Q ++ RG I++ATPGRL D +E + V ++VLDEADRMLDMGF P
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQ 332
Query: 210 IEKMM 224
I K++
Sbjct: 333 IRKIV 337
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +2
Query: 251 ERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTKYEKRNSLKQ 427
+RQTL++SAT+P +++ LA +FL + +G A+ + Q+ V EK N L
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402
Query: 428 LIEE-NDGKRILVFVETKRNADFIAAMLR 511
L+++ DG +IL+FVETKR D + LR
Sbjct: 403 LLKQLMDGSKILIFVETKRGCDQVTRQLR 431
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGL 639
+IHGD+ Q ER+ L FKSG+ I+ AT VAARGL
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/77 (37%), Positives = 50/77 (64%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI 711
++ + QR R +++ F++ ++ IL+AT + ARG+DIKNV +++Y LP S + YVHR
Sbjct: 531 TLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRC 590
Query: 712 GRTGRVGNRGKAVSFYD 762
GRT R G +++ +
Sbjct: 591 GRTARAFADGCSIALIE 607
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFV---ERNRVSFGSVRFVVLDEADR 182
+KV GG Q + I+VATPGRL + + E++ V S+ F VLDEADR
Sbjct: 308 VKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADR 367
Query: 183 MLDMGFMPSIEKMM-LHPTMVETTKGK 260
M++ G ++ ++ L P + +GK
Sbjct: 368 MVERGHFRELQSILDLLPVTDKPNEGK 394
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 64.9 bits (151), Expect = 6e-11
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Frame = +1
Query: 487 RLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVV 666
++H + +AE +S+HG+ + +R++ ++ FK +L+AT V ARG D + V++VV
Sbjct: 355 KVHKA-LAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVV 413
Query: 667 NYDLPKSIDE-------YVHRIGRTGRVGNRG 741
NY+LP + Y+HR+GR GR G +G
Sbjct: 414 NYNLPTKYETGEPDYEVYLHRVGRAGRFGRKG 445
Score = 35.1 bits (77), Expect = 0.059
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 HILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDM-GFMPSIEKMM 224
H+++ TPG L ++ R+ ++ +V DEAD ML GF K+M
Sbjct: 216 HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIM 264
Score = 31.5 bits (68), Expect = 0.73
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +2
Query: 257 QTLMFSATFPEDIQHLAGRFLN--NYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSL--K 424
Q L+FSATF E ++ R + N LFV + A V+Q + K + + +
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDPNQLFVKREDL--ALDSVKQYKVVCPKEQNKIEVIKD 332
Query: 425 QLIEENDGKRILVFVETKRNADFIAAMLRNSNCSHLQFTAIACNVSARKRYRILR 589
Q++E D + ++FV+TK +A + L T++ N++ R +I++
Sbjct: 333 QIMELGDIGQTIIFVKTKASAQKVHKALAEMG---YDVTSVHGNLTESDRDKIVK 384
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
S +GD Q R+ + F++ K +L+ T +AARG+DI +D V+N+D P +VHR
Sbjct: 299 SVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHR 358
Query: 709 IGRTGRVGNRGKAVSF 756
+GR R G G A SF
Sbjct: 359 VGRAARAGRTGCAYSF 374
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 LKVAVAYGGTAVRHQGDNIARGCHILVATPGRL-HDFVERNRVSFGSVRFVVLDEADRML 188
L+V++ GG ++ Q + + +G +++ATPGRL H E + ++ +V +VV DEAD +
Sbjct: 127 LRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLF 186
Query: 189 DMGFMPSIEKMM 224
MGF + +++
Sbjct: 187 GMGFAEQLHQIL 198
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI 433
RQTL+FSAT P + A L V + + S D++ F+ V EK ++L L+
Sbjct: 205 RQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLV 264
Query: 434 EE--NDGKRILVFVETKRNADFIAAMLRNSN 520
E + ++ L+FV TK + +F+ ++ + N
Sbjct: 265 REHISSDQQTLIFVSTKHHVEFVNSLFKLEN 295
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/80 (36%), Positives = 44/80 (55%)
Frame = +1
Query: 511 EQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSI 690
E +L IH + Q R FK ILV + V+ARG++ +V +V+ +P
Sbjct: 656 EMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDR 715
Query: 691 DEYVHRIGRTGRVGNRGKAV 750
++Y+HR+GRTGR G GK +
Sbjct: 716 EQYIHRLGRTGREGKGGKGL 735
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNI-ARGCHILVATPGRLHDFVERNRVSFGS----VRFVVLDEADR 182
V GGT R + + C IL+ATPGRL D +E N+ S ++ ++DEAD
Sbjct: 484 VQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIE-NKSGLTSRLMALKLFIVDEADL 542
Query: 183 MLDMGFMPSIEKMM 224
+LD+GF +EK++
Sbjct: 543 LLDLGFKRDVEKII 556
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 62.9 bits (146), Expect = 3e-10
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +1
Query: 511 EQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSI 690
E +L IH + Q R FK ILV + V+ARG++ +V +V+ +P
Sbjct: 609 EMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDR 668
Query: 691 DEYVHRIGRTGRVGNRGKAV 750
++Y+HR+GRTGR G G+ +
Sbjct: 669 EQYIHRLGRTGREGKGGEGL 688
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNI-ARGCHILVATPGRLHDFVERNRVSFGS----VRFVVLDEADR 182
V GGT + + + C IL+ATPGRL D +E N+ S ++ ++DEAD
Sbjct: 437 VQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIE-NKSGLTSRLMALKLFIVDEADL 495
Query: 183 MLDMGFMPSIEKMM 224
+LD+GF +EK++
Sbjct: 496 LLDLGFRRDVEKII 509
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
I G Q +R F + IL+ T VAARGLD +VD +V YD P + +Y+HR+G
Sbjct: 430 IRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVG 489
Query: 715 RTGR-VGNRGKAV 750
RT R G +GKA+
Sbjct: 490 RTARGEGAKGKAL 502
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVER-NRVSFGSVRFVVLDEADRMLDM 194
V GG + + + +A+G ++LVATPGRL D +E N F +++F+V+DEADR+L+
Sbjct: 257 VGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQ 316
Query: 195 GFMPSIEKMM 224
F ++K++
Sbjct: 317 NFEEDLKKIL 326
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNN--YLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQ 427
RQT +FSAT ++ LA L + Y+ V G + +EQ + V + L
Sbjct: 333 RQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLT 392
Query: 428 LIEENDG-KRILVFVETKRNADFIAAMLR 511
++ G K+I+VF T ++ F A + R
Sbjct: 393 FLKRFQGKKKIMVFFSTCKSTKFHAELFR 421
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/87 (33%), Positives = 46/87 (52%)
Frame = +1
Query: 484 CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIV 663
C+L + + ++ G Q R + L+ F+ G +LVA+ RG+D+K V V
Sbjct: 342 CKL-LNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNV 400
Query: 664 VNYDLPKSIDEYVHRIGRTGRVGNRGK 744
+NYD+P ++HR GRT R G G+
Sbjct: 401 INYDMPPFAKTFIHRAGRTARAGQAGR 427
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 63 NIARGCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRML 188
N+ ILVATPGRL D + + + +R++V+DE DR+L
Sbjct: 161 NLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLL 203
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 58.0 bits (134), Expect = 7e-09
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 532 SIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI-KNVDIVVNYDLPKSIDEYVHR 708
S+HG Q +R F + +L T V ARGLD K VD VV D P+ + Y+HR
Sbjct: 347 SLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHR 405
Query: 709 IGRTGRVGNRGKAVSF 756
+GRT R +GK++ F
Sbjct: 406 VGRTARFYTQGKSLLF 421
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 RQTLMFSATFPEDIQHLAGRFLNN--YLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQ 427
RQTL+FSAT + ++ LA L + Y+ V V T + Q + V +K + L
Sbjct: 250 RQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWS 309
Query: 428 LIEENDGKRILVFVETKRNADFI 496
I+ + RILVF+ TK+ F+
Sbjct: 310 FIKTHLNSRILVFLSTKKQVKFV 332
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 HILVATPGRLHDFVERN-RVSFGSVRFVVLDEADRMLDMGFMPSIEKMM 224
+ILV PGRL ++ ++ ++LDEADR+LD F ++ ++
Sbjct: 195 NILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPII 243
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 58.0 bits (134), Expect = 7e-09
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+ GD R +L + G +LV+T +AARG+D+ + N+DLP+++ +Y+HR G
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 430
Query: 715 RTGR 726
R GR
Sbjct: 431 RAGR 434
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEAD 179
+A+ GGT RH+ A ILVAT L +E++ SVR +V+DE D
Sbjct: 181 MALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 58.0 bits (134), Expect = 7e-09
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIG 714
+ GD R +L + G +LV+T +AARG+D+ + N+DLP+++ +Y+HR G
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 273
Query: 715 RTGR 726
R GR
Sbjct: 274 RAGR 277
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 18 VAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEAD 179
+A+ GGT RH+ A ILVAT L +E++ SVR +V+DE D
Sbjct: 24 MALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVD 77
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 511 EQQLLTSSIHGDRMQREREEALQNFKSGK----HCILVATAVAARGLDIKNVDIVVNYDL 678
E+QL H Q R +Q F S + LV T A+RG+D VD VV +D
Sbjct: 662 ERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDF 721
Query: 679 PKSIDEYVHRIGRTGRVGNRGKAVSF 756
P+ EYV R+GRT R G RGK +F
Sbjct: 722 PRDPSEYVRRVGRTAR-GARGKGKAF 746
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 3 GSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEAD 179
G + V GG R Q +N+ +G +L+ATPGR + + ++R +LDE D
Sbjct: 478 GVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 631 RGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVS 753
RG+D K V V+N+D+P+S+ Y+HRIGRTGR + G +VS
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVS 438
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +1
Query: 496 SSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYD 675
S ++ + + H ++R ++F S K ++VAT GLD +V V+++
Sbjct: 503 SKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFS 562
Query: 676 LPKSIDEYVHRIGRTGRVGNRGKAVSFYD 762
+P S++EYV IGR GR G FYD
Sbjct: 563 VPGSMEEYVQEIGRAGRDGRLSYCHLFYD 591
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/98 (28%), Positives = 52/98 (53%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C +T C S H++ + +++ H + R L ++ S K I+VAT G+D
Sbjct: 170 CLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDK 229
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
K+V +V ++++PKS++ + GR GR ++V +Y
Sbjct: 230 KDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYY 267
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/98 (28%), Positives = 52/98 (53%)
Frame = +1
Query: 466 CRNKT*CRLHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDI 645
C +T C S H++ + +++ H + R L ++ S K I+VAT G+D
Sbjct: 263 CLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDK 322
Query: 646 KNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFY 759
K+V +V ++++PKS++ + GR GR ++V +Y
Sbjct: 323 KDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYY 360
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/74 (37%), Positives = 38/74 (51%)
Frame = +1
Query: 538 HGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGR 717
H + ER L +F+ + V T AARG+D+ NV V+ D S +++HRIGR
Sbjct: 455 HKNHKLDERANILADFRETGG-VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 718 TGRVGNRGKAVSFY 759
T R G G S Y
Sbjct: 514 TARAGQYGTVTSLY 527
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/61 (37%), Positives = 38/61 (62%)
Frame = +1
Query: 553 QREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVG 732
Q+ ++ L+ F++G ++VAT++ GLDI VD+V+ +D S + R+GRTGR
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKN 572
Query: 733 N 735
N
Sbjct: 573 N 573
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 GCHILVATPGRLHDFVERNR-VSFGSVRFVVLDEADRMLDMGFMPSI 212
G ++L+ TPGRL D ++R + F ++ ++LDEADR+LDMGF +
Sbjct: 135 GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 181
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 538 HGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNV 654
HG Q+ R+ AL +F +L+ T VAARGLDI +
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +1
Query: 559 EREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGN 735
+ ++ + F+ G +LVAT+VA GLDI+ ++V+ +DL K++ Y+ GR + G+
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGS 769
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 538 HGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-SIDEYVHRIG 714
HG + ++ EE ++ F GK IL+ T + GLDI+N + ++ D+ + + + G
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRG 572
Query: 715 RTGRVGNRGKAVSFY 759
R GR A FY
Sbjct: 573 RVGRADKEAHAYLFY 587
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +1
Query: 577 QNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSF 756
Q+F K ++VAT G+D KNV +++Y +S++ Y GR GR G + V +
Sbjct: 541 QDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
Query: 757 YDLIR 771
DL R
Sbjct: 601 ADLSR 605
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 553 QREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGR 717
+R E L+ F+S + +LVAT V GLDI+ +V+ YDLP+++ ++ GR
Sbjct: 557 RRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGR 611
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 490 LHSSHVAEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVN 669
L+ + + + + ++ ++ D + R L+ FK+ +LV + GL+ D++V+
Sbjct: 630 LNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVD 689
Query: 670 YDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDL 765
+LP Y HR GR R G + V+ +L
Sbjct: 690 LELPTDAVHYAHRAGRMRRPGRKMTVVTAEEL 721
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRI- 711
+HG ++EEAL F+SG+ IL++T V G+D+ + ++V + + +H++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLR 861
Query: 712 GRTGRVGNRGKAV 750
GR GR + K +
Sbjct: 862 GRVGRGTRKSKCL 874
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/58 (25%), Positives = 38/58 (65%)
Frame = +1
Query: 544 DRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGR 717
++ ++++ E +++F+ G I+VAT++ GLD+++ ++V+ +D +I ++ GR
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 486
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+S G + +R + + GK C + AT G+D+ ++D+ ++ P SI +
Sbjct: 607 TSYRGGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 666
Query: 709 IGRTGR 726
GR+GR
Sbjct: 667 AGRSGR 672
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 35.5 bits (78), Expect = 0.045
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFK---SGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVH 705
+HG QR+R+ + NF SG +L +T + G+ + VV D+ +
Sbjct: 978 MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQ 1037
Query: 706 RIGRTGRVGNRGKAVSFYDLI 768
I R R+G + +AV Y L+
Sbjct: 1038 AISRAFRIGQK-RAVFIYHLM 1057
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 34.7 bits (76), Expect = 0.078
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +1
Query: 514 QQLLTSSIHGDRMQREREEALQNFKS-GKHCI--LVATAVAARGLDIKNVDIVVNYD--- 675
++L+ I G +RE A+ +F C L++ A RGL+++ D VV YD
Sbjct: 1347 RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDP 1406
Query: 676 LPKSIDEYV---HRIGRTGRV 729
PK+ ++ V HRIG+T V
Sbjct: 1407 NPKNEEQAVARAHRIGQTREV 1427
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 34.7 bits (76), Expect = 0.078
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +1
Query: 514 QQLLTSSIHGDRMQREREEALQNFKS-GKHCI--LVATAVAARGLDIKNVDIVVNYD--- 675
++L+ I G +RE A+ +F C L++ A RGL+++ D VV YD
Sbjct: 1346 RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDP 1405
Query: 676 LPKSIDEYV---HRIGRTGRV 729
PK+ ++ V HRIG+T V
Sbjct: 1406 NPKNEEQAVARAHRIGQTREV 1426
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 341 VGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRI---LVFVETKRNADFI 496
V I+GG D+ ++F+EVT R + +++ E K + VF T NA ++
Sbjct: 52 VPIIGGRDLDLHKLFVEVT---SRGGINKILNERRWKEVTATFVFPPTATNASYV 103
>At5g23940.1 68418.m02811 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 484
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 284 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLI-----EENDG 448
PE ++ + N +++ G GG S DVE I +E + EK K+ + EE+DG
Sbjct: 400 PETVRSGSNNRFNGMMYLYQGKAGGISIDVE-ITLEASVMEKLVKSKEFLLSEEEEEDDG 458
Query: 449 KRI 457
K++
Sbjct: 459 KKL 461
>At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to
guanylate kinase (GK-2) [Arabidopsis thaliana]
gi|7861798|gb|AAF70409
Length = 389
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+S+HG+ E SGK CIL AR + ++D + + P S+ E R
Sbjct: 207 ASVHGNLYGTSIESVEVVTDSGKRCILDIDVQGARSVKASSLDAIFIFVCPPSMKELEDR 266
Query: 709 IGRTG 723
+ G
Sbjct: 267 LRARG 271
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 529 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHR 708
+S+HG+ E SGK CIL AR + ++D + + P S+ E R
Sbjct: 207 ASVHGNLYGTSIESVEAVTDSGKRCILDIDVQGARSVRASSLDAIFIFVCPPSMKELEDR 266
Query: 709 IGRTG 723
+ G
Sbjct: 267 LRARG 271
>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 893
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 670 YDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDLIRI*P*WLIFQ 798
Y++ ++ YVH +G GR G +A + + + P +IF+
Sbjct: 659 YNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFK 701
>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 881
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 498 AMKSALRFVSTN-TKILLPSFSSMSCFRLFRFS 403
AMK +L F T TK + SF S CFR R+S
Sbjct: 2 AMKPSLHFCPTTVTKKFVYSFQSSFCFRFLRYS 34
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 341 VGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLRNS 517
+ IVGG S D+ ++F EVT R L+++I++ K ++ K A +LR S
Sbjct: 57 IPIVGGKSLDLHRLFNEVT---SRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKS 112
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 87 LVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKM 221
+VATP RL + V V +V +V+DE + G++ +++ +
Sbjct: 250 IVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSI 294
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +1
Query: 535 IHGDRMQREREEALQNFKSGKHCILVATAVAAR--GLDIKNVDIVVNYDLPKS------I 690
I G + R+R+ A+Q+F+ + V A GLD VV +LPK+
Sbjct: 584 IDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQA 643
Query: 691 DEYVHRIGRTGRV 729
++ HR G+T V
Sbjct: 644 EDRAHRRGQTSAV 656
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 553 QREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEY 699
Q+ + E F+ GK +L T V G + + +V +DLPK++ Y
Sbjct: 407 QKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 490 LHSSHVAEQQLLTSSIHGDRMQREREEALQNFK 588
LHS EQ++LTS +H R+Q RE ++N K
Sbjct: 420 LHSQSQEEQKVLTSELH-SRIQMLRELEMRNSK 451
>At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 600
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 544 DRMQREREEALQNFKSGKHCILVATAVAA--RGLDIKNVDIVVNYDLPKSI 690
D + +E+ + + K+ ATAV A R LD K + V+NYD+ +S+
Sbjct: 466 DAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESL 516
>At5g52290.1 68418.m06489 hypothetical protein
Length = 1569
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 72 RGCHILVATPGRLHDFVERNRVSF-GSVRFVVLDEADRMLDMGFMPS 209
RGC V LHD RN +F + V+D AD+ L+ F PS
Sbjct: 1286 RGCKFPVMRDFNLHD--NRNSENFIADYKGEVIDRADKYLEEDFPPS 1330
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -3
Query: 195 PYLTYGQPHPVRQILHCQMIHDSFPQNHEDGLVLLPICDSL*QCYHLDGAQQCHHKQLQP 16
P+L + QP P R HC + + Q+H+ + P + + G + C+ + P
Sbjct: 647 PHLLFNQPRPKRCATHCYIARNI--QSHQQFTKMNPFWPAAAGSAPMYGTKACNLSLMPP 704
Query: 15 SKL 7
++L
Sbjct: 705 TEL 707
>At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b, Arabidopsis thaliana, PIR:T41745 [gi:3790575];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 208
Score = 27.9 bits (59), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 147 CQMIHDSFPQNHEDGLVLLPIC 82
C + + F ++H+D ++LLP C
Sbjct: 153 CSICMEDFSESHDDNIILLPDC 174
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 544 DRMQREREEALQNFKSGKHCILVATAVAARGL-DIKNVDIV 663
DR + E EE+ +SG + I A GL D K+VD+V
Sbjct: 32 DRKKNEEEESTPTMRSGSNQIDDPRVYVASGLDDCKDVDVV 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,263
Number of Sequences: 28952
Number of extensions: 411944
Number of successful extensions: 1200
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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