Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00842
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 166 3e-42
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 162 6e-41
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 139 5e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 136 3e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 1e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 75 9e-15
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 64 2e-11
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 46 8e-06
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.33
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.00
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.3
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 5.3
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.3
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 166 bits (404), Expect = 3e-42
Identities = 75/92 (81%), Positives = 84/92 (91%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 182
EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGRKF+D VQ+D
Sbjct: 25 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSD 84
Query: 183 MKHWPFEVVSDGGKPKIKVAYKGETKPFSPRK 278
MKHWPF+V+S GKP ++V YKGETK F+P +
Sbjct: 85 MKHWPFKVISKDGKPVLQVEYKGETKTFTPEE 116
Score = 157 bits (380), Expect = 2e-39
Identities = 71/87 (81%), Positives = 82/87 (94%)
Frame = +1
Query: 508 IIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 687
+IFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+
Sbjct: 194 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITG 253
Query: 688 NKRALRRLRTACERAKRTLSSSTQAAL 768
N RA+RRLRTACERAKRTLSSS QA++
Sbjct: 254 NARAVRRLRTACERAKRTLSSSAQASI 280
Score = 143 bits (346), Expect = 3e-35
Identities = 70/88 (79%), Positives = 76/88 (86%)
Frame = +2
Query: 248 G*NKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 427
G KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLN
Sbjct: 107 GETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166
Query: 428 VLRIINEPTAAAIAYGLDKKGTGERNVL 511
VLRIINEPTAAAIAYGLD+ GE NVL
Sbjct: 167 VLRIINEPTAAAIAYGLDRSNQGESNVL 194
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 162 bits (393), Expect = 6e-41
Identities = 73/92 (79%), Positives = 82/92 (89%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 182
EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGR+F D VQ+D
Sbjct: 25 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSD 84
Query: 183 MKHWPFEVVSDGGKPKIKVAYKGETKPFSPRK 278
MKHWPF+V+ GKP I+V +KGETK F+P +
Sbjct: 85 MKHWPFKVIEKDGKPLIQVEFKGETKTFTPEE 116
Score = 157 bits (381), Expect = 2e-39
Identities = 72/90 (80%), Positives = 82/90 (91%)
Frame = +1
Query: 499 TKCIIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 678
T +IFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 679 LATNKRALRRLRTACERAKRTLSSSTQAAL 768
+ N RA+RRLRTACERAKRTLSSS QA++
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 136 bits (330), Expect = 3e-33
Identities = 67/88 (76%), Positives = 75/88 (85%)
Frame = +2
Query: 248 G*NKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 427
G KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLN
Sbjct: 107 GETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166
Query: 428 VLRIINEPTAAAIAYGLDKKGTGERNVL 511
VLRIINEPTAAAIAYGLD+ E NVL
Sbjct: 167 VLRIINEPTAAAIAYGLDRSNQHETNVL 194
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 139 bits (336), Expect = 5e-34
Identities = 61/92 (66%), Positives = 75/92 (81%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 182
EII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP NT+FDAKRLIGR++ED Q D
Sbjct: 29 EIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKD 88
Query: 183 MKHWPFEVVSDGGKPKIKVAYKGETKPFSPRK 278
+KHWPF+V+ + G P I+V Y GE K F+ ++
Sbjct: 89 IKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQE 120
Score = 136 bits (330), Expect = 3e-33
Identities = 62/87 (71%), Positives = 74/87 (85%)
Frame = +1
Query: 508 IIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 687
+IFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++
Sbjct: 198 LIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISD 257
Query: 688 NKRALRRLRTACERAKRTLSSSTQAAL 768
+ RALRRLR+ACERAKR LSS TQ +
Sbjct: 258 DPRALRRLRSACERAKRALSSVTQTTV 284
Score = 125 bits (302), Expect = 6e-30
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = +2
Query: 248 G*NKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 427
G K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLN
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLN 170
Query: 428 VLRIINEPTAAAIAYGLDKKGTGERNVL 511
VLRIINEPTAAAIAYGLD K +NVL
Sbjct: 171 VLRIINEPTAAAIAYGLDAKSDKPKNVL 198
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 136 bits (329), Expect = 3e-33
Identities = 64/88 (72%), Positives = 79/88 (89%)
Frame = +2
Query: 248 G*NKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 427
G K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLN
Sbjct: 140 GKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLN 199
Query: 428 VLRIINEPTAAAIAYGLDKKGTGERNVL 511
V+RI+NEPTAAAIAYGLDK T E++++
Sbjct: 200 VIRIVNEPTAAAIAYGLDKTDT-EKHIV 226
Score = 124 bits (298), Expect = 2e-29
Identities = 55/92 (59%), Positives = 71/92 (77%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 182
EIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NTIFD KRLIGRKF++ T+ D
Sbjct: 58 EIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKD 117
Query: 183 MKHWPFEVVSDGGKPKIKVAYKGETKPFSPRK 278
+K +PF +V+D +P ++V G+ K F+P +
Sbjct: 118 IKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEE 149
Score = 106 bits (255), Expect = 3e-24
Identities = 44/81 (54%), Positives = 66/81 (81%)
Frame = +1
Query: 508 IIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 687
+++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+
Sbjct: 226 VVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTK 285
Query: 688 NKRALRRLRTACERAKRTLSS 750
+ +A+ +L+ E+AKRTLSS
Sbjct: 286 DLKAMGKLKREVEKAKRTLSS 306
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 1e-29
Identities = 55/77 (71%), Positives = 67/77 (87%)
Frame = +2
Query: 257 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 436
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 437 IINEPTAAAIAYGLDKK 487
++NEPTAAA+AYGLDKK
Sbjct: 216 VVNEPTAAALAYGLDKK 232
Score = 103 bits (246), Expect = 4e-23
Identities = 46/80 (57%), Positives = 62/80 (77%)
Frame = +1
Query: 511 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 690
+FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ +
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD 298
Query: 691 KRALRRLRTACERAKRTLSS 750
+ A++R+R A E+AK LSS
Sbjct: 299 RLAVQRIREAAEKAKCELSS 318
Score = 83.8 bits (198), Expect = 3e-17
Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 179
++IAN +G RTTPS VAFT D ERL+G +AK Q +NP NT F KRLIGR+F++ VQ
Sbjct: 73 KVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQR 132
Query: 180 DMKHWPFEVV 209
D+K P+++V
Sbjct: 133 DIKEVPYKIV 142
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 75.4 bits (177), Expect = 9e-15
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +1
Query: 511 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 690
I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+ +N
Sbjct: 203 IVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSN 262
Query: 691 KRALRRLRTACERAKRTLSSSTQAAL 768
+A RL TA ER K+ LS++ A L
Sbjct: 263 PKATFRLATAVERLKKVLSANANAPL 288
Score = 65.3 bits (152), Expect = 9e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +2
Query: 296 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 475
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 476 LDK 484
+ K
Sbjct: 187 ITK 189
Score = 56.0 bits (129), Expect = 6e-09
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ-A 179
++I N+ NR+TPS V++ + R +G+AAK+ A N NT+ KRL GR ++D ++
Sbjct: 28 DVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDI 87
Query: 180 DMKHWPFEVVSDGGKPKIKVAYKGETKPFS 269
+ ++ G KV Y E FS
Sbjct: 88 ESNFISAKLTEVDGFVGAKVQYLNEETAFS 117
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 64.5 bits (150), Expect = 2e-11
Identities = 29/86 (33%), Positives = 52/86 (60%)
Frame = +1
Query: 508 IIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 687
++ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D
Sbjct: 220 VVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRK 279
Query: 688 NKRALRRLRTACERAKRTLSSSTQAA 765
N R+L +LR CE KR LS+ T A+
Sbjct: 280 NARSLAKLRAQCEITKRVLSNGTTAS 305
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 257 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 436
K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL+
Sbjct: 136 KILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQ 195
Query: 437 IINEPTAAAIA 469
+I++P A +A
Sbjct: 196 LIHDPAAVILA 206
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/94 (22%), Positives = 51/94 (54%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 182
+++AN++GNR PS +++ + G A+ Q+ N +N++ + + L+G+ ++ T+
Sbjct: 47 DVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNSVTNFRDLLGKSHDELTLH-- 104
Query: 183 MKHWPFEVVSDGGKPKIKVAYKGETKPFSPRKSV 284
H+ V+ G+ K+ + E + P++ +
Sbjct: 105 HCHYSANPVNVEGQIGFKITVQ-EDEESDPKEKI 137
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 8e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 272 EEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEP 451
EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL +I++
Sbjct: 138 EEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDN 197
Query: 452 TAAAIAYGLDK 484
A AI Y L +
Sbjct: 198 VAVAIEYSLSR 208
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK-FEDATVQA 179
EI+ R S VAF ER+ G A N P ++I + K L+ E VQ
Sbjct: 46 EIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQK 105
Query: 180 DMKHWP 197
+P
Sbjct: 106 YQSSYP 111
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 48 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 227
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 228 KIKVAYKGETKPF 266
+K+ G + F
Sbjct: 185 -LKLMIDGTVRNF 196
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.00
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 623 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 513
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 659 LNSWTKWLTMRLSKSSPPKWVSPAVDF 579
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 479 DKKGTGERNVLS----LTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 640
D K GE N+ + + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 641 TLSRS 655
+ +++
Sbjct: 113 STTQT 117
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 278 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 400
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 527 AVPSTCPSLPSRMVSSR*NPPPATPTW 607
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,772
Number of Sequences: 5004
Number of extensions: 72314
Number of successful extensions: 256
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -