Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00842
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.60 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 527 AVPSTCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 691
           A  S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 74  AFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 563 SSMVRMDTSKVPPPRSKIIHFVLQYPFCQDRKQSQQQ 453
           S  V  D S+  PP  ++ H    +P  Q + Q QQQ
Sbjct: 799 SKSVNGDQSQ--PPHQQLHHHQSTHPQAQAQAQPQQQ 833


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 613 HLPSGCRRRWISPRRYHP 560
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 383 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 475
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 269 GKRFCFTLICYLDLRF 222
           G RF  TL C +DL +
Sbjct: 152 GMRFTTTLACMMDLHY 167


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 WRTKCIIFDLGGGTFDVSILT 555
           WR   ++++   G F+V++ T
Sbjct: 111 WRPDIVLYNNADGNFEVTLAT 131


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 WRTKCIIFDLGGGTFDVSILT 555
           WR   ++++   G F+V++ T
Sbjct: 107 WRPDIVLYNNADGNFEVTLAT 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,796
Number of Sequences: 438
Number of extensions: 4948
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)