Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00841
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    68   2e-10
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.031
UniRef50_Q9YVQ6 Cluster: ORF MSV186 leucine rich repeat gene fam...    35   2.0  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 32/39 (82%), Positives = 34/39 (87%)
 Frame = +3

Query: 438  VFPECYDVSFFKRGLWRVLNGRQRLALPWPGIAEVHGRR 554
            VFPE YD+SFFKRGLWRVL+GRQRL    PGIAEVHGRR
Sbjct: 949  VFPERYDMSFFKRGLWRVLSGRQRLGSA-PGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.1 bits (92), Expect = 0.031
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 544 MGDGNHSPSGGPYARQPTRA 603
           MGDGNHSPSG PYA  PTRA
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q9YVQ6 Cluster: ORF MSV186 leucine rich repeat gene family
           protein, similar to Amsacta moorei entomopoxvirus Q3 ORF
           SW:P28854; n=1; Melanoplus sanguinipes
           entomopoxvirus|Rep: ORF MSV186 leucine rich repeat gene
           family protein, similar to Amsacta moorei entomopoxvirus
           Q3 ORF SW:P28854 - Melanoplus sanguinipes entomopoxvirus
           (MsEPV)
          Length = 340

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = -1

Query: 261 LYLNRRIFKIDMNYYILSTITVID 190
           LYLNRR+FK+D++Y  +S + +ID
Sbjct: 99  LYLNRRLFKLDLSYNFISYLYIID 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,251,470
Number of Sequences: 1657284
Number of extensions: 13791358
Number of successful extensions: 24606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24603
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)