Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00841
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    26   0.39 
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    22   4.8  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   6.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   6.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.4  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 468 RRTRHSTRETPLMLFVLNLTSLFCYKFTNV*RNKVRGTLTYVFRSFNYYNRYLQ 307
           R      R + L L  ++L   F Y F         G  TY+F   N+ N Y+Q
Sbjct: 120 RLAEKQARISILELVAVHLVLAFLYSFDLFANGITFGWHTYIFDVPNFVNEYVQ 173


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 304 TLIYLTLIWQY*GYVVFES 248
           T +Y  L+W + GY +F S
Sbjct: 70  TSLYPVLVWIHGGYFIFGS 88


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 468 RRTRHSTRETPLMLFVLNL 412
           +R RH  R + L++FV++L
Sbjct: 123 KRNRHIFRTSVLLIFVMHL 141


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 468 RRTRHSTRETPLMLFVLNL 412
           +R RH  R + L++FV++L
Sbjct: 123 KRNRHIFRTSVLLIFVMHL 141


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 547 GDGNHSPSGGP 579
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 486 RVLNGRQRLALPWP 527
           R+ + RQR+A+ WP
Sbjct: 123 RMKDKRQRMAIAWP 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,079
Number of Sequences: 336
Number of extensions: 3620
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)